Factsheet for TraesCS2D01G183500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G202200.1	Wheat	cytosol	96.51	96.97
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	96.83	96.83
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	87.3	88.28
TraesCS7D01G414000.1	Wheat	cytosol	16.83	66.67
Os07t0603100-01	Rice	extracellular	51.9	57.47
Zm00001d022071_P002	Maize	cytosol	39.21	42.15
GSMUA_Achr4P00640_001	Banana	cytosol	24.29	39.53
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	34.13	39.45
Solyc10g083060.1.1	Tomato	cytosol	5.08	38.1
KRH45051	Soybean	cytosol	25.87	35.28
KRH01288	Soybean	cytosol	25.87	34.24
CDY42844	Canola	cytosol	24.13	34.16
AT5G60980.3	Thale cress	cytosol	24.92	34.13
Bra012989.1-P	Field mustard	cytosol	24.29	34.0
Bra029343.1-P	Field mustard	cytosol	24.13	33.85
CDY16827	Canola	cytosol	24.13	33.48
Bra035946.1-P	Field mustard	cytosol	24.13	33.48
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	26.35	33.2
Solyc02g088920.2.1	Tomato	cytosol	20.79	33.16
KRH56802	Soybean	cytosol, nucleus	24.13	32.9
TraesCS2D01G277000.1	Wheat	plastid	25.08	32.51
KRH03143	Soybean	cytosol, nucleus	23.65	32.39
VIT_01s0011g00400.t01	Wine grape	cytosol	24.76	32.23
CDY23092	Canola	mitochondrion	23.81	31.85
OQU90215	Sorghum	cytosol	38.57	31.4
Solyc02g066830.2.1	Tomato	cytosol	19.37	30.58
Solyc02g030530.1.1	Tomato	cytosol	13.81	30.53
CDY02179	Canola	plastid	24.29	30.36
CDX87195	Canola	plastid	24.44	29.62
VIT_14s0068g00310.t01	Wine grape	cytosol	24.44	29.11
CDY47006	Canola	cytosol	19.84	28.87
PGSC0003DMT400003713	Potato	cytosol	21.59	27.53
Solyc02g032790.1.1	Tomato	cytosol	12.86	26.82
KRH57274	Soybean	cytosol, mitochondrion	8.57	25.12
Solyc02g030490.1.1	Tomato	cytosol	9.05	23.17
TraesCS2D01G363800.1	Wheat	nucleus	14.13	19.82
TraesCS7D01G280400.2	Wheat	cytosol	13.65	19.55
GSMUA_Achr1P24520_001	Banana	nucleus	28.25	18.02

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF26	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
EnsemblPlantsGene:TraesCS2D01G183500	EnsemblPlants:TraesCS2D01G183500.1	TIGR:cd00590	TIGR:cd00780	SEG:seg	:

Description

No Description!

Coordinates

chr2D:+:128406533..128410158

Molecular Weight (calculated)

69428.8 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.914

Length

630 amino acids

Sequence
(BLAST)

001: MSTPTGNFVR PFHPDVIGNA FAQQYYRVLG SSPEHVHKFY HDESILGRPD SDGPLTSITT TYAINQHFLS TDMKGCLIQL DNVDTQPSHG GGVLILVTGS
101: LTMLDTVKHR FVQSFFLAPQ ENGGYFVLND VLRAVPEMPL AETNEALVDH VNGNTQIAPF PAEPETSVNE SMDPELPSAG NISTNGEVIN PSAETIPVDA
201: EVITPSAENI SISDEVMDPS VESISSKEKV INSFGNENSQ IKNDAIKIPE VAPTPASAQK DVIKKTYASI VKATNESIPP APITKPKPKP KPRPNPTVKR
301: AENGEKSSSV PAKTTHAADT APPNDQNISD DQGYSIFVKN LPMNATIEMV EAEFSKFGSI KPRGIQVVHR QADGFCFGFV EFESEKSMNA AIEVFKVRFG
401: SYVSYVEEKR TPKRVVNGVT HSEYNGNARG SRVLPDRGGY HGDNFRGQGA GFVNNGNYRD GDNFRGQGPS FGNNNNYRDG ENFRGRGAGF VNNGNNYRDG
501: NNMRKDNRNQ NEYSGHGRGA QGNDYRQNDS RQNRNDYRQD GNGYRQNGDD YRQNRDGYRQ NGDGFRQNRD GYRQIGDGFR QNRDGYRQNG DDYRQNGNGH
601: HQPRPVHNGN GNANGRPGRF NGPKQIAVTA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.