CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45051	Soybean	cytosol	88.03	90.69
KRH57274	Soybean	cytosol, mitochondrion	40.76	90.23
Solyc10g083060.1.1	Tomato	cytosol	11.97	67.86
Solyc02g088920.2.1	Tomato	cytosol	44.33	53.42
VIT_14s0068g00310.t01	Wine grape	cytosol	56.51	50.85
KRH03143	Soybean	cytosol, nucleus	46.64	48.26
KRH56802	Soybean	cytosol, nucleus	46.22	47.62
GSMUA_Achr4P00640_001	Banana	cytosol	37.82	46.51
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	39.71	45.87
Solyc02g030530.1.1	Tomato	cytosol	27.31	45.61
PGSC0003DMT400003713	Potato	cytosol	46.22	44.53
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	43.28	44.3
TraesCS7D01G414000.1	Wheat	cytosol	14.29	42.77
TraesCS7B01G322100.1	Wheat	cytosol	14.29	42.77
Solyc02g066830.2.1	Tomato	cytosol	35.71	42.61
TraesCS7A01G421800.1	Wheat	cytosol	13.87	41.25
KRH46640	Soybean	cytosol	39.08	40.26
KRG99633	Soybean	cytosol	39.92	39.92
Solyc02g032790.1.1	Tomato	cytosol	25.21	39.74
Solyc02g030490.1.1	Tomato	cytosol	18.07	34.96
Os03t0418800-01	Rice	mitochondrion	38.24	34.8
TraesCS3B01G431000.2	Wheat	cytosol	37.6	32.72
TraesCS3A01G398600.1	Wheat	cytosol	37.6	32.66
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	37.4	32.66
HORVU3Hr1G089630.1	Barley	cytosol	37.18	32.6
KRH67452	Soybean	cytosol	29.62	31.19
KXG39124	Sorghum	cytosol	10.29	30.62
Os07t0603100-01	Rice	extracellular	36.55	30.58
KRG95733	Soybean	cytosol	28.78	30.44
Zm00001d047289_P003	Maize	plasma membrane	36.13	29.45
HORVU0Hr1G007150.3	Barley	cytosol	17.23	29.39
KRG90305	Soybean	cytosol	27.94	28.06
KRH33563	Soybean	cytosol	27.73	28.03
KRG92252	Soybean	cytosol	27.52	27.87
EER94684	Sorghum	cytosol	35.71	27.42
Zm00001d022071_P002	Maize	cytosol	32.56	26.45
TraesCS2B01G202200.1	Wheat	cytosol	34.24	26.0
TraesCS2D01G183500.1	Wheat	cytosol	34.24	25.87
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	34.03	25.71
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	33.19	25.36
GSMUA_Achr1P24520_001	Banana	nucleus	43.28	20.85
OQU90215	Sorghum	cytosol	33.19	20.41

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A0R0FE79	EMBL:ACUP02011510	EnsemblPlantsGene:GLYMA_18G267400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KRH01288	ProteinID:KRH01288
ProteinID:KRH01288.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF25	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0006ED6ADF	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:55171420..55176356

Molecular Weight (calculated)

51821.6 Da

IEP (calculated)

8.659

GRAVY (calculated)

-0.538

Length

476 amino acids

Sequence
(BLAST)

001: MALQTATPPT TPSAQVVGNA FVEQYYHILH HSPDLVYRFY QDSSVISRPD SSGVMTSVTT MKGINEKILS LNFKEFKAEI KTADAQKSYK EGVTVLVTGC
101: LTGKDNLRRK FAQSFFLAPQ DNGYFVLNDV FRYVEDHEPS ELPPVTGDGD AAAVTVTPEP GKIIIQKICI FSFKIYSGVG FMLFSFFTEP SHFADSSAPD
201: PTNSHVNKGQ TVAENAYEPS NHHERQIPVE NVDNVEPHFQ SNGNDDSQAT ELASSAQEKK SYASIVKVQK EGSVATKVYV PTNTLKSGPN KTENKVVESV
301: ESTEVSEAAL DIEGHSIYIR NLPLNVTAAQ LELEFKKFGP IKPGGIQVRN NKQQGYCFGF VEFLSLNSMN SAIQASPVPI GGRQAVVEIK RTTTRVGSGI
401: NSTGRPRIPP GRGGLRNDSF RGRGNYGGGR GYGRNDYVSR GEFSGRGHGH GHGEGYHQGR GRGGRSSGQK QNAVSN

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.