CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33563	Soybean	cytosol	93.67	94.27
KRG92252	Soybean	cytosol	76.58	77.23
VIT_05s0049g01940.t01	Wine grape	cytosol	67.72	67.58
Solyc09g090940.2.1	Tomato	nucleus	59.07	59.83
PGSC0003DMT400003781	Potato	cytosol	59.07	59.7
GSMUA_Achr2P10150_001	Banana	cytosol	49.79	52.44
GSMUA_Achr4P30210_001	Banana	cytosol	48.73	51.45
KRH67452	Soybean	cytosol	46.62	48.89
KRG95733	Soybean	cytosol	45.78	48.22
GSMUA_Achr11P...	Banana	cytosol	47.26	47.46
Zm00001d021999_P002	Maize	plasma membrane	42.41	45.89
KXG36602	Sorghum	cytosol	41.98	45.33
Os02t0131700-00	Rice	plastid	42.19	44.64
TraesCS7A01G281900.1	Wheat	nucleus	40.08	43.68
TraesCS7B01G179500.1	Wheat	nucleus	39.66	43.22
TraesCS7D01G280400.2	Wheat	cytosol	36.71	39.55
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	40.51	35.36
KRH03143	Soybean	cytosol, nucleus	30.17	31.09
KRG99633	Soybean	cytosol	31.01	30.88
KRH56802	Soybean	cytosol, nucleus	29.96	30.74
KRH46640	Soybean	cytosol	29.75	30.52
KRH45051	Soybean	cytosol	28.9	29.65
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	24.47	28.16
KRH01288	Soybean	cytosol	28.06	27.94
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	25.11	25.59
KRH57274	Soybean	cytosol, mitochondrion	10.97	24.19
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	2.32	2.02

Protein Annotations

EntrezGene:100817177	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02012597	EnsemblPlantsGene:GLYMA_20G081800
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0030529	UniProt:I1NEL5	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KRG90305
ProteinID:KRG90305	ProteinID:KRG90305.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF31
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00023DCE02
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:30815136..30819240

Molecular Weight (calculated)

52620.9 Da

IEP (calculated)

6.464

GRAVY (calculated)

-0.700

Length

474 amino acids

Sequence
(BLAST)

001: MATPFPIPVT AAQVGTYFVG QYYQVLQSQP EFVHQFYSDA STMLRIDGNA RETAAAMLQI HALIMSLSYA RIEIKTAQSL ESWSGGVLVM VSGSVQVKDY
101: SRRRKFMQTF FLAPQEKGFF VLNDIFHFVE EDPVHQQQPV LLPQSNLDSK LNASSATNKP VSNYLLGGDI QARDYVATNE VKENGVVDNY GFSEQRMQRA
201: PDTEHIREDN TVEESNGSLQ SSVNAVQDHV PVSPDEPAGE PQKHTYASIL RVAKGLSTPV ASQPSHKNVS PSEWDHAPHS SSQQQQTIAS ANAFERSETD
301: AVEEFPATED EGYYEIKSVY VRNLSPAVSP SEIEDEFKNF GRIRPDGVVV RSRKDVGVCY AFVEFEDMTG VHNAVKAGSV QIAGRQVYIE ERRPNSNIPS
401: RGGRRGRGRG SYQSDAPRGR FNSRNFGRGN GQDGGDRDYN KSKGNGFYRP SPHQERGHSG HHQVPRNGQN LAES

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.