Factsheet for VIT_05s0049g01940.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33563	Soybean	cytosol	68.63	69.21
KRG90305	Soybean	cytosol	67.58	67.72
Solyc09g090940.2.1	Tomato	nucleus	63.37	64.32
PGSC0003DMT400003781	Potato	cytosol	62.74	63.54
KRG92252	Soybean	cytosol	59.79	60.43
GSMUA_Achr2P10150_001	Banana	cytosol	53.26	56.22
VIT_07s0005g04300.t01	Wine grape	cytosol	54.32	55.48
GSMUA_Achr4P30210_001	Banana	cytosol	50.95	53.9
GSMUA_Achr11P...	Banana	cytosol	50.11	50.42
Zm00001d021999_P002	Maize	plasma membrane	43.37	47.03
KXG36602	Sorghum	cytosol	42.74	46.24
Os02t0131700-00	Rice	plastid	43.16	45.76
TraesCS7A01G281900.1	Wheat	nucleus	40.84	44.6
TraesCS7B01G179500.1	Wheat	nucleus	40.63	44.37
TraesCS7D01G280400.2	Wheat	cytosol	38.32	41.36
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	41.47	36.28
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	31.16	29.6
VIT_00s0216g00030.t01	Wine grape	cytosol	31.16	28.03
VIT_01s0011g00400.t01	Wine grape	cytosol	27.79	27.27
VIT_00s2623g00010.t01	Wine grape	cytosol	16.0	27.24
VIT_14s0068g00310.t01	Wine grape	cytosol	29.26	26.28
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	1.89	1.65

Protein Annotations

EntrezGene:100261382	wikigene:100261382	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	ProteinID:CBI23721
ProteinID:CBI23721.3	UniProt:D7SZP2	EMBL:FN595496	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EntrezGene:LOC100261382
wikigene:LOC100261382	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF31	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0001BE27DB	ArrayExpress:VIT_05s0049g01940
EnsemblPlantsGene:VIT_05s0049g01940	EnsemblPlants:VIT_05s0049g01940.t01	RefSeq:XP_002285469	RefSeq:XP_002285469.1	RefSeq:XP_010650159.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:9402677..9419298

Molecular Weight (calculated)

52414.1 Da

IEP (calculated)

5.847

GRAVY (calculated)

-0.567

Length

475 amino acids

Sequence
(BLAST)

001: MATPFPFHVT AAQVGAYFVG QYYQVLQQQP DFVHQFYSDA STVLRVDGNT RETASAMLQI HTLIMSLNYT GIEIKTAHSL ESWNGGVLVV VSGSVQIKDF
101: SGRRKFVQTF FLAPQEKGFF VLNDILHFID EDLIQQHPAA LLAQSSLDSR LNASNTIPEP VSNYMLGGEI QAREFVAPVN AMENGPVDRY GFPEQRLQQV
201: TETDNIPEDN SGEDSNGSLQ NVMNTLQDLP PAPVDEPVGE PQKHTYASIL RVAKGQSVPS VSPQSYNNKS MPPASEWHHM PQPSNEQSVA SSVMFEKPAS
301: EVAEEVSGVE DEGEIKSVYV RNLPSTVSAS EIAKEFKNFG RLKPDGVVIR NRKDNIGVCY AFVEYEDISG VQNAIKASTI QIAGRQVHIE ERRANNNSLS
401: RGGRRGRGRG SYQSEAPRGR YGARTFGRGN GQDGGDRDYN RPRGNGFYRP SARQDRGFSG NQVSRDSLNI SELST

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.