Factsheet for Solyc09g090940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003781	Potato	cytosol	97.86	97.65
VIT_05s0049g01940.t01	Wine grape	cytosol	64.32	63.37
KRH33563	Soybean	cytosol	59.62	59.24
KRG90305	Soybean	cytosol	59.83	59.07
KRG92252	Soybean	cytosol	54.06	53.83
GSMUA_Achr2P10150_001	Banana	cytosol	46.37	48.22
GSMUA_Achr4P30210_001	Banana	cytosol	46.15	48.11
Solyc06g083730.2.1	Tomato	nucleus	43.59	44.84
GSMUA_Achr11P...	Banana	cytosol	44.23	43.86
KXG36602	Sorghum	cytosol	40.38	43.05
Zm00001d021999_P002	Maize	plasma membrane	40.17	42.92
Os02t0131700-00	Rice	plastid	40.17	41.96
TraesCS7B01G179500.1	Wheat	nucleus	38.68	41.61
TraesCS7A01G281900.1	Wheat	nucleus	38.25	41.15
TraesCS7D01G280400.2	Wheat	cytosol	35.04	37.27
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	38.25	32.97
Solyc09g059310.2.1	Tomato	extracellular, nucleus	30.34	29.96
Solyc10g083060.1.1	Tomato	cytosol	5.34	29.76
Solyc06g083300.2.1	Tomato	nucleus	29.7	29.2
Solyc06g007780.2.1	Tomato	cytosol	29.27	28.66
Solyc02g066830.2.1	Tomato	cytosol	23.08	27.07
Solyc02g088920.2.1	Tomato	cytosol	22.44	26.58
Solyc02g030530.1.1	Tomato	cytosol	15.81	25.96
Solyc02g032790.1.1	Tomato	cytosol	16.03	24.83
Solyc02g030490.1.1	Tomato	cytosol	11.54	21.95
Solyc05g012240.1.1	Tomato	cytosol	19.23	21.9
Solyc05g012230.2.1	Tomato	extracellular	7.48	8.52
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	2.14	1.83

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:K4CWC0
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF31	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc09g090940.2	EnsemblPlants:Solyc09g090940.2.1	UniParc:UPI000276B19F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:70334792..70341413

Molecular Weight (calculated)

52397.0 Da

IEP (calculated)

5.476

GRAVY (calculated)

-0.601

Length

468 amino acids

Sequence
(BLAST)

001: MATPFHLPVT AAQVGTYFVG QYYQMLQTQP DFVHQFYSDA STVLRIDSST RETASGMLQI HTLVTSLQYT GIEIKTLHSL ESWNGGVLVM VSGSVSVKGI
101: NRSRKFVQSF FLAPQEKGYF VLNDIFHYVD EEQILQQPLA YLAHSNLDSK LNVSNALQEQ VPNYMFGGEI QAREFVDAPK IEDNGPVNNY SFPEERLQHV
201: SEAENILEDN FAVQSNGPLQ STINAVQDHL SCPVEEPVAE PQKHTYASIL QVTKGNSAQG LAQSSLNKST PPPSEWQHVP EPPALPSVHS TNTIERYTEA
301: TEEASAVEDE VEVKSVYVKN VPTTMAAYEI EEEFKKFGKL KPDAVAIRTR KDIDVCYAFV EFEDVTGVQN AIEASTVQIG GHQLYIEGRR PNRNNLIRGR
401: GRGRGRVSYS MDGRGRYGGR GFGRGGQDGG DRDYGRSRGN GYYRQTPRQE RAYPSNQQSL RNEQYSWE

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.