Factsheet for Solyc06g007780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g119040.2.1
Solyc06g069010.2.1
Solyc12g040510.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	Solyc03g119040.2.1	AT1G48630.1	21798944
AT5G48650.1	Solyc06g069010.2.1	AT1G48630.1	21798944
AT5G48650.1	Solyc12g040510.1.1	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053195	Potato	cytosol	48.54	90.62
Solyc09g059310.2.1	Tomato	extracellular, nucleus	72.38	73.0
Solyc06g083300.2.1	Tomato	nucleus	70.5	70.8
VIT_00s0216g00030.t01	Wine grape	cytosol	56.9	51.52
KRH46640	Soybean	cytosol	49.58	51.3
KRG99633	Soybean	cytosol	50.42	50.63
VIT_00s2623g00010.t01	Wine grape	cytosol	26.15	44.8
Bra015105.1-P	Field mustard	cytosol	42.05	43.32
CDX77365	Canola	cytosol	42.05	42.41
Solyc10g083060.1.1	Tomato	cytosol	7.32	41.67
CDY00813	Canola	cytosol	41.63	41.46
Solyc02g088920.2.1	Tomato	cytosol	32.01	38.73
Solyc02g066830.2.1	Tomato	cytosol	30.75	36.84
AT3G25150.2	Thale cress	plastid	44.14	35.95
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	34.31	35.81
Solyc02g030530.1.1	Tomato	cytosol	21.13	35.44
Solyc02g032790.1.1	Tomato	cytosol	22.18	35.1
CDX85353	Canola	cytosol	33.68	34.7
CDX86290	Canola	cytosol	34.31	33.47
Bra037472.1-P	Field mustard	cytosol	34.1	33.27
Solyc02g030490.1.1	Tomato	cytosol	15.69	30.49
Solyc09g090940.2.1	Tomato	nucleus	28.66	29.27
Solyc06g083730.2.1	Tomato	nucleus	27.41	28.79
Solyc05g012240.1.1	Tomato	cytosol	22.8	26.52
AT3G07250.1	Thale cress	nucleus	24.27	17.13
Solyc05g012230.2.1	Tomato	extracellular	8.79	10.22

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:K4C3F9
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc06g007780.2	EnsemblPlants:Solyc06g007780.2.1	UniParc:UPI000276632A
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:1728885..1733953

Molecular Weight (calculated)

52224.6 Da

IEP (calculated)

5.117

GRAVY (calculated)

-0.570

Length

478 amino acids

Sequence
(BLAST)

001: MEAAVAAVVQ HPVPAQVVGN AFVQQYYHIL HHSPGLVFRF YQDISKLGRP EDDGSMSITT TMEAINHKIL SLNYGDFRAE IKSVDSQESF NGGVHVFVTG
101: SLTGNDTLIR NFSQTFFLAP QDRGYFVLND MFRYVESVDQ HDPAEVPETD VVAPVTPELA SPPVQQNHIS ELSTLSVEEA NEGEIYNPPE NADVPVEEEV
201: PVAEVVDEMQ DDSQVEVESN IKSEDTPKKS YASIVMHLKG SAASFSSPPA PASRKPMARN VEQVNQPPVT ATVRPASSSN SVDNVNNQDG EVTDGYSIYV
301: KGLPPTATVD LLADEFKKFG PIKNGGIQVK NNRLQRFSYG FVEFEEASAL QKAIEASPIL IGGRQAYVEE KKSTNYRGHF RGRFQSGGGS GYRNYGVRGR
401: GNYGGGRGYA RDDFGERTEF NNRGGQRGWS SNRGGDGYQS YQRTDNTGGY VVRTNRGGGM LNGTAKHMTP QGIAAPVM

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.