Factsheet for Bra015105.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77365	Canola	cytosol	97.63	95.57
AT3G25150.2	Thale cress	plastid	81.68	64.57
KRH46640	Soybean	cytosol	47.63	47.84
KRG99633	Soybean	cytosol	48.71	47.48
Solyc09g059310.2.1	Tomato	extracellular, nucleus	48.28	47.26
Solyc06g083300.2.1	Tomato	nucleus	47.63	46.43
PGSC0003DMT400051956	Potato	cytosol	47.2	45.91
PGSC0003DMT400053195	Potato	cytosol	25.22	45.7
VIT_00s0216g00030.t01	Wine grape	cytosol	51.29	45.08
Solyc06g007780.2.1	Tomato	cytosol	43.32	42.05
PGSC0003DMT400071822	Potato	cytosol, plastid	41.16	39.79
Bra029343.1-P	Field mustard	cytosol	37.72	38.98
VIT_00s2623g00010.t01	Wine grape	cytosol	22.2	36.92
Bra012989.1-P	Field mustard	cytosol	35.78	36.89
Bra035946.1-P	Field mustard	cytosol	35.78	36.56
Bra037472.1-P	Field mustard	cytosol	35.99	34.08
Bra019707.1-P	Field mustard	cytosol	28.23	32.59
Bra025122.1-P	Field mustard	cytosol	25.65	29.75
Bra033707.1-P	Field mustard	cytosol	27.8	29.45
Bra004006.1-P	Field mustard	cytosol	23.71	27.85
Bra027517.1-P	Field mustard	cytosol, mitochondrion	27.59	27.71
Bra004367.1-P	Field mustard	cytosol	24.57	24.05
Bra038318.1-P	Field mustard	cytosol	25.22	22.9
Bra004005.1-P	Field mustard	cytosol	24.35	21.61

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra015105	EnsemblPlants:Bra015105.1	EnsemblPlants:Bra015105.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	UniProt:M4DF33	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002540BEB
SEG:seg	:	:	:	:	:

Description

AT3G25150 (E=1e-163) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:+:3463346..3465497

Molecular Weight (calculated)

50333.8 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.561

Length

464 amino acids

Sequence
(BLAST)

001: MAMLAQTPPC TPDIVGNTFV HQYYHILHQS PQHVHRFYQE ISKLGRPEDN GTMSITSTLQ AIDKKILALG SGVISAEIAT VDTQESYGGG FLLLVTGYLT
101: GTDGVRRTFT QTFFLARQET GYFVLNDMFR YIDDATTVRG TQIPVNNIQV PVNIHQDPHA AQDIPEDFVQ EKYVQENHAV EQSKSINVPE VFTPPEEEQV
201: SVTEDAPAPG IVHEAPHDVH KVGESDSSRT GEVPKRSYAS IVMVMKENAA PMSASRTPTK VVEPKRQQED HQATHVPLPT PLSEKSDSRA NVAVNGNDQD
301: NERTPGPSIY LKGLPLDATP ALLENEFQKF GPIRTNGIQV RSQKGFCFGF VEFESASSMQ SAIEASPIIL RNHRGRAAFG VGTGYRNEGG RGRGSFRGGR
401: GGGYGRNDFN GYGNNRGNNR GGYANRANGD GGGFPRRVRR GAGGGIDANG ATKPVDAPPV SITA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.