Factsheet for Bra019707.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra021524.1-P
Bra027380.1-P
Bra037472.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13730.1	Bra021524.1-P	AT3G13990.1	21798944
AT1G13730.1	Bra027380.1-P	AT3G13990.1	21798944
AT1G13730.1	Bra037472.1-P	AT5G48650.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98124	Canola	cytosol	97.76	98.0
AT1G13730.1	Thale cress	cytosol	76.62	71.96
Bra025122.1-P	Field mustard	cytosol	56.47	56.75
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	37.31	36.41
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	38.31	33.12
Bra029343.1-P	Field mustard	cytosol	36.07	32.29
Bra012989.1-P	Field mustard	cytosol	35.57	31.78
Bra004006.1-P	Field mustard	cytosol	30.35	30.89
Bra035946.1-P	Field mustard	cytosol	34.83	30.84
Bra015105.1-P	Field mustard	cytosol	32.59	28.23
Bra004367.1-P	Field mustard	cytosol	32.59	27.64
Bra038318.1-P	Field mustard	cytosol	34.83	27.4
Bra004005.1-P	Field mustard	cytosol	33.83	26.0
Bra037472.1-P	Field mustard	cytosol	30.85	25.31
Bra033707.1-P	Field mustard	cytosol	24.63	22.6
Solyc05g012240.1.1	Tomato	cytosol	22.64	22.14
Bra027517.1-P	Field mustard	cytosol, mitochondrion	25.37	22.08
PGSC0003DMT400072921	Potato	cytosol	22.89	14.56
Solyc05g012230.2.1	Tomato	extracellular	6.47	6.33

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra019707	EnsemblPlants:Bra019707.1	EnsemblPlants:Bra019707.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	UniProt:M4DT64	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI000253EDF2	SEG:seg	:	:	:	:

Description

AT1G13730 (E=2e-068) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:4872937..4874662

Molecular Weight (calculated)

43806.4 Da

IEP (calculated)

8.333

GRAVY (calculated)

-0.513

Length

402 amino acids

Sequence
(BLAST)

001: MALVESNAPL ADPHIVGNAF VQKYYNHLYE SPSQVHRFYL EDSVLGRPGS DGEMVSVNSL KAINEQIMSF DYENSKIQIL TADSQASYKS GVVTLVTGLL
101: TVKDGERMRF SQSFFLVPQK GSYFVLNDVF RYVSDELVAE PEANKKEVEE EVEVIPQVAE AVAIPTQQTT ETLVKEPARA VENVDAPKKS FAVIVQSPAK
201: VGAAFNVKAS SPAKPVKKLS AALESKAPAP VPQIDQSAEG GSIFVANLPM DATPEQLNET FKGFGVIRKD AIQVRSYRLK GNCFGFVTFE SAEAVKLVLQ
301: AHKESAIRIG NRRVSIEEKR GNNENSRPSL RNGGYRSENG YRNDGFRPRG YGFNGGGGGH GGNGYERRGE SRNAEANNNG DGSRAYQNGL VKSSRENAQA
401: RG

Best Arabidopsis Sequence Match ( AT1G13730.1 )
(BLAST)

001: MALESNAPVV DPNTIGNSFV EKYYNLLYKS PSQVHQFYLD DSVLGRPGSD GEMVSVKSLK AINEQIMSFD YEISKIQILT ADSQASYMNG VVTLVTGLLT
101: VKEGQRMRFS QSFFLVPLNG SYFVLNDVFR YVADEIVEPE ANKKEVEEVI PQVVQPTEQV DEVAEPVTIP TQQPEAKQTT ENTVKKPERA VANGHPKTQE
201: DNVVNDKSNG VDAPKKSFAH IVQDLAQNGA TFNAKASPAK PKSKPVTKPS AARESKAPAP VSEHSSAATI DQQAEGYTIF VANLLMDATP EQLNETFKGF
301: GAITKDGIQV RSYRLKGNCF GFVTFASAEA VKLVLQAHKE SAIRIGNRRV SIEEKRGNND NGRPAMRNGG YRNDNGYRND GYRPRGNGSN GGRGYGRNGS
401: ERRGESRNGE AHNGDGKVHQ NGTVEASR

Arabidopsis Description

At1g13730 [Source:UniProtKB/TrEMBL;Acc:Q9LMX6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.