Factsheet for Bra035946.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16827	Canola	cytosol	100.0	100.0
Bra012989.1-P	Field mustard	cytosol	83.7	84.44
CDX87195	Canola	plastid	96.04	83.85
Bra029343.1-P	Field mustard	cytosol	82.6	83.52
AT5G60980.3	Thale cress	cytosol	84.58	83.48
KRH03143	Soybean	cytosol, nucleus	51.54	50.87
KRH56802	Soybean	cytosol, nucleus	51.54	50.65
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	49.56	45.0
GSMUA_Achr4P00640_001	Banana	cytosol	35.68	41.86
TraesCS7D01G414000.1	Wheat	cytosol	14.32	40.88
TraesCS7B01G322100.1	Wheat	cytosol	14.1	40.25
TraesCS7A01G421800.1	Wheat	cytosol	14.1	40.0
Bra015105.1-P	Field mustard	cytosol	36.56	35.78
Bra019707.1-P	Field mustard	cytosol	30.84	34.83
Bra033707.1-P	Field mustard	cytosol	29.74	30.82
KXG39124	Sorghum	cytosol	10.57	30.0
Bra025122.1-P	Field mustard	cytosol	26.43	30.0
Os03t0418800-01	Rice	mitochondrion	34.14	29.64
Bra027517.1-P	Field mustard	cytosol, mitochondrion	29.74	29.22
TraesCS3B01G431000.2	Wheat	cytosol	34.8	28.88
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	34.58	28.81
TraesCS3A01G398600.1	Wheat	cytosol	34.58	28.65
Bra004006.1-P	Field mustard	cytosol	24.89	28.61
Bra037472.1-P	Field mustard	cytosol	30.62	28.37
HORVU3Hr1G089630.1	Barley	cytosol	33.7	28.18
HORVU0Hr1G007150.3	Barley	cytosol	17.18	27.96
Os07t0603100-01	Rice	extracellular	34.8	27.77
Zm00001d047289_P003	Maize	plasma membrane	35.46	27.57
Bra004367.1-P	Field mustard	cytosol	27.09	25.95
EER94684	Sorghum	cytosol	34.8	25.48
Bra038318.1-P	Field mustard	cytosol	28.41	25.24
TraesCS2B01G202200.1	Wheat	cytosol	33.48	24.24
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	33.26	24.24
TraesCS2D01G183500.1	Wheat	cytosol	33.48	24.13
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	33.04	23.81
Zm00001d022071_P002	Maize	cytosol	30.18	23.38
Bra004005.1-P	Field mustard	cytosol	25.77	22.37
GSMUA_Achr1P24520_001	Banana	nucleus	42.29	19.43
OQU90215	Sorghum	cytosol	31.5	18.48

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra035946	EnsemblPlants:Bra035946.1	EnsemblPlants:Bra035946.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4F4E6	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002541FB7
SEG:seg	:	:	:	:	:

Description

AT5G60980 (E=5e-169) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA09:+:2798268..2800441

Molecular Weight (calculated)

48739.5 Da

IEP (calculated)

5.054

GRAVY (calculated)

-0.612

Length

454 amino acids

Sequence
(BLAST)

001: MAQQEASTSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSLLTRPDVT GTVTTVTTMQ AINDKIMSLN YEDYTAEIDT ADAQESHERG VIVLVTGRLT
101: GKDNVRKKFS QTFFLAPQDK GYFVLNDVFR FLEEKDVSTQ ARSVTIKDVQ APVEPESVIV SHEAEVEPEP VATIEEEDVE NVAEVYDPCE KDEGVVVDVE
201: PIDPPAQIIH SEILSVSNGD PPTYASILKL MKSSPAPPSL VARNKPRAAA PVRTNQKPAP PPAGHAAAPN DSSGLENVQN SSNVDVEDDG HSIYVRNLPF
301: DTTPTQLEEV FKSFGDVKHE GIQVRSNKQQ GFCFGFVEFE TSSGKQSALE ASPITIGDRQ VVLEEKKTNS RGGNNGGGRG RYFGGRGSFR NESFKGGRGG
401: GVGGGGGRGW YGRGEFSGRP NPRNGGEGYQ RVPQNGGGGR GGGRGGPRGG GVSS

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.