Factsheet for Bra025122.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51206	Canola	cytosol	94.75	92.44
CDY36616	Canola	cytosol	92.75	91.15
Bra019707.1-P	Field mustard	cytosol	56.75	56.47
AT2G03640.4	Thale cress	nucleus	62.75	55.41
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	33.75	32.77
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	34.25	29.46
Bra004006.1-P	Field mustard	cytosol	27.0	27.34
Bra012989.1-P	Field mustard	cytosol	30.25	26.89
Bra035946.1-P	Field mustard	cytosol	30.0	26.43
Bra029343.1-P	Field mustard	cytosol	29.5	26.28
Bra015105.1-P	Field mustard	cytosol	29.75	25.65
Bra004367.1-P	Field mustard	cytosol	29.75	25.11
Bra038318.1-P	Field mustard	cytosol	31.75	24.85
Bra004005.1-P	Field mustard	cytosol	30.75	23.52
Bra037472.1-P	Field mustard	cytosol	27.5	22.45
Bra033707.1-P	Field mustard	cytosol	23.5	21.46
Bra027517.1-P	Field mustard	cytosol, mitochondrion	24.0	20.78
Solyc05g012240.1.1	Tomato	cytosol	20.75	20.19
PGSC0003DMT400072921	Potato	cytosol	22.25	14.08
Solyc05g012230.2.1	Tomato	extracellular	6.25	6.08

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra025122	EnsemblPlants:Bra025122.1	EnsemblPlants:Bra025122.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4E8L6	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000253F800
SEG:seg	:	:	:	:	:

Description

AT2G03640 (E=4e-053) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:23337295..23339043

Molecular Weight (calculated)

43184.6 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.565

Length

400 amino acids

Sequence
(BLAST)

001: MTPVSNAPSV DAQIVGNAFV QKYYTHLYEK PAEVYRFYLE ESVLGRPGLD GEMVSVKSLK AINDQIMSVD YQNSKIQILT ADSQASLKSA VVTLVAGLVI
101: GKDGERKSFT QSFFLVPQNG SYFVLNDVFR YVSDVFVAPE ATKEAEVEVE ESPKEAVPAE PAKEVVEPAA RATNEEKVVN GNTNLPKAAE AKPQEDTGVK
201: KSFAVIAAQN GAQTNAKASP AKPKPVEKPR VAPQAKAAPQ PKAPSAKTSE QPPAQGGSIF VANLPMDASP EQLLETFKGF GAIRRGGIQV RSYTEQRNCF
301: GFVAFENSES IKNVFKVCFY ALIKFSNFNI LPINNNENGG RAYARNNGNN RNENGYRKDG YRPRGNGVNG GRGSGRNGPE RQSGDAKASQ NGHGNAQAKN

Best Arabidopsis Sequence Match ( AT2G03640.2 )
(BLAST)

001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITAEPAN ESVEAVIVPT EAKTTVTKPA SAIPNGHAKV PEEKVVNENS
201: SLPKAAEAKL QEEVPKKSFA LIVQSLAQSA GTLQVKASPV KRKPVEKPVA APERKAPSPI RKQASAESIK PQAQGSSIFV ANLPMDATIE QLYETFKSFG
301: AIRKDGIQVR SYPEKKNCIG FVAFENGEAV KNVFQAHRES PIRIGNRRAS IEEKRGGNNQ NGNRVSTRNN SGYKNEDGFR RDGYKPRGSG VNGGRGYGRR
401: NSESNGDGKA YQNNGHGNTE AKN

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IT98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.