Factsheet for Bra004006.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07356	Canola	cytosol	99.75	99.75
Bra004005.1-P	Field mustard	cytosol	80.25	60.61
Bra004367.1-P	Field mustard	cytosol	62.53	52.11
AT1G69250.1	Thale cress	cytosol	50.38	46.6
Bra038318.1-P	Field mustard	cytosol	54.68	42.27
Bra019707.1-P	Field mustard	cytosol	30.89	30.35
Bra025122.1-P	Field mustard	cytosol	27.34	27.0
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	28.1	26.94
Bra029343.1-P	Field mustard	cytosol	29.11	25.61
Bra012989.1-P	Field mustard	cytosol	29.11	25.56
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	29.62	25.16
Bra035946.1-P	Field mustard	cytosol	28.61	24.89
Bra015105.1-P	Field mustard	cytosol	27.85	23.71
Solyc05g012240.1.1	Tomato	cytosol	21.52	20.68
Bra037472.1-P	Field mustard	cytosol	24.56	19.8
Bra027517.1-P	Field mustard	cytosol, mitochondrion	21.77	18.61
Bra033707.1-P	Field mustard	cytosol	20.0	18.04
PGSC0003DMT400072921	Potato	cytosol	19.49	12.18
Solyc05g012230.2.1	Tomato	extracellular	6.33	6.08

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra004006	EnsemblPlants:Bra004006.1	EnsemblPlants:Bra004006.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4CIH2	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002541981
SEG:seg	:	:	:	:	:

Description

AT1G69250 (E=6e-035) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:-:16255963..16257526

Molecular Weight (calculated)

43116.4 Da

IEP (calculated)

10.112

GRAVY (calculated)

-0.420

Length

395 amino acids

Sequence
(BLAST)

001: MAAEGCVYDA HQVSEAFVKK YYHFVVTATH AAHQFYGVDS LVTRPGPDGT MMSFSSVEAI KKHYRSSYYD GATFDVVSVD TQSSSGGGIL IMVIGFLTGK
101: DNLKRKFSQA FYLARQNRNY VVSNDVHRFV DEEGMFAKSC PQVTKPVEKI KKTGQVHKAT KKKSVNAAEV KKVVAPEKAV VTAPKPKEPV AETSAAPPLV
201: GAKISYASIV LSMLRNAAPV QVKAAPVQKP STVAQPKPHV APAPEKKSDQ KMVDEPGTSI FVSNLPMDAR PLQVYELFKR FGALEGKGVQ IRSSRASGSC
301: FAFVAFESVA SVQSVLKAAK SNQFKLGEHK LRVKEKQVEY NSSNPSDWRS ECGSMSQSGS VDGSKTENVY VGGEEDDGFT LVRSRRNRSG KRRQE

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.