Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g007780.2.1 | |
| Solyc06g083300.2.1 | |
| Solyc09g059310.2.1 | |
| Solyc12g049230.1.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072921 | Potato | cytosol | 73.24 | 47.63 |
| Solyc05g012240.1.1 | Tomato | cytosol | 12.17 | 12.17 |
| Solyc10g083060.1.1 | Tomato | cytosol | 1.95 | 9.52 |
| Solyc06g007780.2.1 | Tomato | cytosol | 10.22 | 8.79 |
| Solyc06g083300.2.1 | Tomato | nucleus | 9.98 | 8.61 |
| Solyc02g066830.2.1 | Tomato | cytosol | 8.03 | 8.27 |
| KRG89479 | Soybean | cytosol, endoplasmic reticulum, nucleus | 9.25 | 8.17 |
| Solyc02g088920.2.1 | Tomato | cytosol | 7.79 | 8.1 |
| Solyc09g059310.2.1 | Tomato | extracellular, nucleus | 9.25 | 8.02 |
| Solyc09g090940.2.1 | Tomato | nucleus | 8.52 | 7.48 |
| Solyc02g030490.1.1 | Tomato | cytosol | 4.38 | 7.32 |
| Solyc02g032790.1.1 | Tomato | cytosol | 5.11 | 6.95 |
| KRH50515 | Soybean | cytosol, endoplasmic reticulum, nucleus | 6.81 | 6.8 |
| Solyc02g030530.1.1 | Tomato | cytosol | 4.62 | 6.67 |
| CDY40904 | Canola | nucleus | 6.81 | 6.5 |
| CDX98124 | Canola | cytosol | 6.33 | 6.48 |
| Bra019707.1-P | Field mustard | cytosol | 6.33 | 6.47 |
| CDY50308 | Canola | cytosol | 6.57 | 6.46 |
| CDY36405 | Canola | cytosol | 6.33 | 6.42 |
| CDY54146 | Canola | cytosol | 6.81 | 6.38 |
| CDY07356 | Canola | cytosol | 6.08 | 6.33 |
| Bra004006.1-P | Field mustard | cytosol | 6.08 | 6.33 |
| Bra025122.1-P | Field mustard | cytosol | 6.08 | 6.25 |
| CDY04270 | Canola | cytosol | 6.33 | 6.24 |
| Solyc06g083730.2.1 | Tomato | nucleus | 6.81 | 6.15 |
| CDY02983 | Canola | cytosol | 6.08 | 6.13 |
| AT1G69250.1 | Thale cress | cytosol | 6.33 | 6.09 |
| AT3G55540.1 | Thale cress | cytosol | 4.87 | 5.99 |
| CDX95953 | Canola | cytosol | 6.81 | 5.98 |
| AT2G03640.4 | Thale cress | nucleus | 6.57 | 5.96 |
| Bra004367.1-P | Field mustard | cytosol | 6.81 | 5.91 |
| CDY36616 | Canola | cytosol | 5.84 | 5.9 |
| CDY51206 | Canola | cytosol | 5.84 | 5.85 |
| CDY04271 | Canola | cytosol | 6.08 | 5.81 |
| CDY07355 | Canola | cytosol | 7.3 | 5.74 |
| Bra004005.1-P | Field mustard | cytosol | 7.3 | 5.74 |
| Bra038318.1-P | Field mustard | cytosol | 6.81 | 5.48 |
| AT1G13730.1 | Thale cress | cytosol | 5.35 | 5.14 |
Protein Annotations
| EnsemblPlants:Solyc05g012230.2.1 | EnsemblPlantsGene:Solyc05g012230.2 | ncoils:Coil | PANTHER:PTHR33476 | PANTHER:PTHR33476:SF15 | SEG:seg |
| UniParc:UPI0002765687 | UniProt:K4BXU6 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5:-:5506427..5508814
Molecular Weight (calculated)
46164.9 Da
IEP (calculated)
4.956
GRAVY (calculated)
-0.640
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFWVVVAAA GAGYVAQCLQ SSSDEKGNLL VDNKKNLLHQ LREKVCPFHI LARKRAKKEV SDDEEVFRFR HLNLDSSDCL EKDSFCPSSA KEYTSTRNKD
101: SGGSFNTTGL PNGMALFYMG IVSGMMSAVI ANSKEIEKVN EKLKWTKNLV QKLENELNVK EIANDDYENP NLCSPSMSTV DEPTSQAEKH ESMSEIEAEL
201: EAELQRLEIS LKVSTFERIF DCVELNPEDE INVVHGDLKL DCLNVQSPDS SGSDSGTWID HSKPANHPVS PRELSSRLHE VIESRLEARI KELEAALYHS
301: QNRACSLETQ QNLSQKACAL RESESSCWYH EADEETTSIR HGSENAFDTN TTTPPFDGGL IDSPNEEQGG LVHERKQPTL IQLLKTESMA LTRELHVSRK
401: QHYHCSKVPI H
101: SGGSFNTTGL PNGMALFYMG IVSGMMSAVI ANSKEIEKVN EKLKWTKNLV QKLENELNVK EIANDDYENP NLCSPSMSTV DEPTSQAEKH ESMSEIEAEL
201: EAELQRLEIS LKVSTFERIF DCVELNPEDE INVVHGDLKL DCLNVQSPDS SGSDSGTWID HSKPANHPVS PRELSSRLHE VIESRLEARI KELEAALYHS
301: QNRACSLETQ QNLSQKACAL RESESSCWYH EADEETTSIR HGSENAFDTN TTTPPFDGGL IDSPNEEQGG LVHERKQPTL IQLLKTESMA LTRELHVSRK
401: QHYHCSKVPI H
001: MDVWLIAATA ATGYIAKQLQ NVTKGKDNVL ESSSEDVKPE SPPGCLLSRL VRVKKANENK FGDEKMLSDG DNPDASTSGE SSGYYETNHS DTLFGLMPEF
101: PEMELGTWKT SGNLVGDTQL NSSFRRNQRF RRLIKPLSSM DSCLMSRFHR EQMTIEDYMT SPFPSPHASV SRPLLVTDGT RVISKSAADS LWLSQHIVLS
201: EDKATLSCGV PGVESSIERV GNEKSKSRKH GLGDATMLLQ IGISIGIMSS FMASQAEVSK VKQELKQTEN LVHDLEDELE MKDTLIVKEI DIEKAAESSE
301: SISNIEAELE AELERLEINM NSSNIETRLS DIIEMEPDCE VEFAQGELRA DRVKGKRLDE TESNQDPSGN STPESGNYAV SPRELSLRLH KVINSRLEKR
401: IGELETALQE SQRKVEQLVM ESESKKKSWS RLWETREVMT YKSESKIPVA IEHTKTNLAE MQPLVMNLTG EALDAFNESY DELMKINDDS EDDDGDSPLE
501: MQDSGIHQED LSSTNKSSPW SHHKDDFKVQ EQELLDLIGI EDEEEKSSDF VNEMEKQLIK QIVEKTKQGS PVVLNAQKML FLMEETEHNL
101: PEMELGTWKT SGNLVGDTQL NSSFRRNQRF RRLIKPLSSM DSCLMSRFHR EQMTIEDYMT SPFPSPHASV SRPLLVTDGT RVISKSAADS LWLSQHIVLS
201: EDKATLSCGV PGVESSIERV GNEKSKSRKH GLGDATMLLQ IGISIGIMSS FMASQAEVSK VKQELKQTEN LVHDLEDELE MKDTLIVKEI DIEKAAESSE
301: SISNIEAELE AELERLEINM NSSNIETRLS DIIEMEPDCE VEFAQGELRA DRVKGKRLDE TESNQDPSGN STPESGNYAV SPRELSLRLH KVINSRLEKR
401: IGELETALQE SQRKVEQLVM ESESKKKSWS RLWETREVMT YKSESKIPVA IEHTKTNLAE MQPLVMNLTG EALDAFNESY DELMKINDDS EDDDGDSPLE
501: MQDSGIHQED LSSTNKSSPW SHHKDDFKVQ EQELLDLIGI EDEEEKSSDF VNEMEKQLIK QIVEKTKQGS PVVLNAQKML FLMEETEHNL
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FNR0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.