CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04270	Canola	cytosol	80.93	83.45
CDY07356	Canola	cytosol	73.72	80.25
CDY07355	Canola	cytosol	89.53	73.61
CDY40904	Canola	nucleus	61.4	61.25
CDX95953	Canola	cytosol	62.56	57.48
CDY50308	Canola	cytosol	55.12	56.7
CDY54146	Canola	cytosol	56.05	54.9
AT1G69250.1	Thale cress	cytosol	50.0	50.35
CDX98124	Canola	cytosol	31.16	33.42
CDY36405	Canola	cytosol	30.0	31.85
CDY02983	Canola	cytosol	28.6	30.15
CDY51206	Canola	cytosol	28.6	30.0
CDY36616	Canola	cytosol	28.37	29.98
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	27.44	28.64
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	29.07	26.88
CDY42844	Canola	cytosol	26.98	26.07
CDY16827	Canola	cytosol	26.51	25.11
CDY47006	Canola	cytosol	25.12	24.94
CDY23092	Canola	mitochondrion	26.98	24.63
CDX77365	Canola	cytosol	26.05	23.63
CDY00813	Canola	cytosol	26.28	23.54
CDY02179	Canola	plastid	26.98	23.02
CDX87195	Canola	plastid	26.28	21.73
CDX85353	Canola	cytosol	22.79	21.12
Solyc05g012240.1.1	Tomato	cytosol	20.0	20.92
CDX86290	Canola	cytosol	23.26	20.41
CDY13135	Canola	mitochondrion	20.93	19.48
CDY36961	Canola	cytosol	20.23	18.47
CDX94739	Canola	cytosol	16.98	17.8
CDY22322	Canola	cytosol	16.74	17.65
PGSC0003DMT400072921	Potato	cytosol	19.07	12.97
Solyc05g012230.2.1	Tomato	extracellular	5.81	6.08

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078ESN8	EnsemblPlants:CDY04271	ProteinID:CDY04271
ProteinID:CDY04271.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00118020001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EEEE7E

Description

BnaC06g25440D

Coordinates

chrLK031950:+:834122..835912

Molecular Weight (calculated)

46189.4 Da

IEP (calculated)

9.983

GRAVY (calculated)

-0.493

Length

430 amino acids

Sequence
(BLAST)

001: MAAEGGVLDA RKASEAFVEK YYHTVGTTTQ AAHTFYADDC IVSRPGPDGT TMSFSSLEAI KKHYLSSYYD GTTFDVVSVD SQSSLGDGVF IMVIGFLTGK
101: DNLKRKFSQA FYLARPNGVY AVVNDIHRFV DEESSTTRAL PFVESVPEVT KPFEEVKKTA QVHKTTKKKS VKAAEVKNVA TPEKAVTAQK PKEPVAETSA
201: TPALDGAKIS YASMVLSMSR NAAPLQVKAA PIQKPSTVAQ PKPHVSPAPV KKSDQKMVDE PGTSIFVSNL PMDARPPQVY ELFKGFGAIK GNGVQIRSSR
301: FSGSCFAFVS FESVASVKSV LKAAKNNQFK LGEHKLRVKE KQVEYNSSKP SGGRSEGGSM SQSGSVDGRK TPAGSVDGIR SQSGSVDGSK PQSGLADGSR
401: TENVSVGGEE DDGFKVVRSR RNRSEKRSQE

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.