CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004005.1-P	Field mustard	cytosol	100.0	100.0
CDY04271	Canola	cytosol	73.61	89.53
CDY04270	Canola	cytosol	65.58	82.25
CDY07356	Canola	cytosol	60.42	80.0
CDY40904	Canola	nucleus	50.48	61.25
CDX95953	Canola	cytosol	52.58	58.76
CDY50308	Canola	cytosol	45.7	57.18
CDY54146	Canola	cytosol	46.27	55.13
AT1G69250.1	Thale cress	cytosol	40.73	49.88
CDX98124	Canola	cytosol	26.2	34.16
CDY36405	Canola	cytosol	25.24	32.59
CDY02983	Canola	cytosol	24.47	31.37
CDY51206	Canola	cytosol	24.47	31.22
CDY36616	Canola	cytosol	24.28	31.2
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	22.18	28.16
CDY42844	Canola	cytosol	22.75	26.74
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	23.71	26.67
CDY47006	Canola	cytosol	21.99	26.56
CDY16827	Canola	cytosol	22.37	25.77
CDY23092	Canola	mitochondrion	22.75	25.27
CDX77365	Canola	cytosol	21.8	24.05
CDY00813	Canola	cytosol	21.99	23.96
CDY02179	Canola	plastid	22.75	23.61
CDX87195	Canola	plastid	21.99	22.12
Solyc05g012240.1.1	Tomato	cytosol	16.44	20.92
CDX85353	Canola	cytosol	18.55	20.91
CDX86290	Canola	cytosol	18.93	20.2
CDY13135	Canola	mitochondrion	17.21	19.48
CDY36961	Canola	cytosol	16.63	18.47
CDX94739	Canola	cytosol	13.96	17.8
CDY22322	Canola	cytosol	13.77	17.65
PGSC0003DMT400072921	Potato	cytosol	16.63	13.77
Solyc05g012230.2.1	Tomato	extracellular	5.74	7.3

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078EZ28	UniProt:A0A078EZ28	EnsemblPlants:CDY07355
ProteinID:CDY07355	ProteinID:CDY07355.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00124315001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0002541980	SEG:seg	:	:	:

Description

BnaA07g24340DBnaA07g24340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078EZ28]

Coordinates

chrLK031978:-:148884..151804

Molecular Weight (calculated)

56748.3 Da

IEP (calculated)

10.323

GRAVY (calculated)

-0.312

Length

523 amino acids

Sequence
(BLAST)

001: MAAEGGALDA RKASEAFVEK YYHTVGTMTH AAHTFYADDC IVTRPGPDGT TMSFSSLEAI KKHYLSSYYD GTTFDVVNVD SQSSLGDGVF IMVIGFLTGK
101: DNLKRKFSQA FYLARPNGVY AVVNDIHRFV DEESSTTRAL PVVESVPEAT KPVEEIKNTA QVHKSTKKKS VKAAEVKKVA TPEKAVTAEK PKEPVAETSA
201: TPALDGAKKS YASMVLSMSR NAAPVQVKAA PVQKPSTVAQ PKPHVAPAPE KKSEQKMVDE PGTSIFVSNL PMDARPPQVY ELFKGFGAIK GNGVQIRSSR
301: FSGSCFAFVS FESVASVKSV LKAAKNNQFK LGEHKLRVKE KQVEYNSSKP SGGRSEGGSM SQSGSVDGRK TPAGSVDGSK TENVSVGGEE DDGFKVVRSR
401: RNRSRSIGKY PLGISFGSFI AVARSRSVNM YVGLLTLVSS GKYPMMLQIL IKKTRILPEA LARAKQAKLM VKPPNTLGET RENALLALFS IKAMKELVQF
501: DLRHQVYSLV RPVQQVKLLP VHI

Best Arabidopsis Sequence Match ( AT1G69250.2 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRVLI FDLSCLCAIS LLITCPTLVT RIPHFSYVSR VMLIQFASGL SPLKLLPQSR ACFRLPRTRP SCLQTVSFV

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.