CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36616	Canola	cytosol	93.63	93.86
CDY51206	Canola	cytosol	93.38	92.93
CDX98124	Canola	cytosol	59.56	60.6
CDY36405	Canola	cytosol	59.8	60.25
AT2G03640.4	Thale cress	nucleus	66.18	59.6
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	35.54	35.19
CDY54146	Canola	cytosol	34.8	32.35
CDY50308	Canola	cytosol	33.09	32.3
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	36.03	31.61
CDY40904	Canola	nucleus	31.13	29.47
CDY04270	Canola	cytosol	29.9	29.26
CDY42844	Canola	cytosol	31.37	28.76
CDY07356	Canola	cytosol	27.7	28.61
CDY04271	Canola	cytosol	30.15	28.6
CDY16827	Canola	cytosol	31.13	27.97
CDX95953	Canola	cytosol	31.62	27.56
CDY23092	Canola	mitochondrion	31.37	27.18
CDY47006	Canola	cytosol	28.68	27.02
CDY02179	Canola	plastid	32.11	25.99
CDX77365	Canola	cytosol	29.9	25.74
CDY00813	Canola	cytosol	29.66	25.21
CDY07355	Canola	cytosol	31.37	24.47
CDX87195	Canola	plastid	31.13	24.42
CDX85353	Canola	cytosol	27.21	23.92
CDX86290	Canola	cytosol	28.68	23.88
CDY13135	Canola	mitochondrion	25.49	22.51
CDX94739	Canola	cytosol	22.06	21.95
CDY22322	Canola	cytosol	21.81	21.81
CDY36961	Canola	cytosol	25.0	21.66
Solyc05g012240.1.1	Tomato	cytosol	21.57	21.41
PGSC0003DMT400072921	Potato	cytosol	23.04	14.87
Solyc05g012230.2.1	Tomato	extracellular	6.13	6.08

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078ETU0	EnsemblPlants:CDY02983	ProteinID:CDY02983
ProteinID:CDY02983.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00115280001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EE9792
SEG:seg	:	:	:	:	:

Description

BnaC07g22440D

Coordinates

chrLK031939:+:86004..88439

Molecular Weight (calculated)

43888.5 Da

IEP (calculated)

9.643

GRAVY (calculated)

-0.580

Length

408 amino acids

Sequence
(BLAST)

001: MTPVSNAPSV DAQIVGNAFV QKYYTHLYEK PAEVYKFYLE ESVLGRPGVG GEMVSVKSLK AINDQIMSVD YQNSKIQILT ADSQASLKSA VVTLVAGLVI
101: GKDGERKSFT QSFFLVPQNG SYFVLNDVFR YVSDVFVAPE AAKEAEVEAE VEESPKETVS AEPAKEVVEP AAKATNEEKV VNGNSNLPKA AAEAKPQEDA
201: GPKKSFAVIA AQSGAQINAK ASPVKPKPVE KPRIAPQAEA PAPVATPPTK APSAKTTQQP AQCGSIFVAN LPMDATPEQL FETFKGFGAI RRGGIQVRSY
301: TEQRNCFGFV AFENSESIKN VFKAHNESPI FIGNRRASIE EKRGKFLNNG GRAYARNNGN NRNENGYRKD GYRPRGNGGR GSGRNGPERQ SGDAKASQNG
401: HGNAQAKN

Best Arabidopsis Sequence Match ( AT2G03640.2 )
(BLAST)

001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITAEPAN ESVEAVIVPT EAKTTVTKPA SAIPNGHAKV PEEKVVNENS
201: SLPKAAEAKL QEEVPKKSFA LIVQSLAQSA GTLQVKASPV KRKPVEKPVA APERKAPSPI RKQASAESIK PQAQGSSIFV ANLPMDATIE QLYETFKSFG
301: AIRKDGIQVR SYPEKKNCIG FVAFENGEAV KNVFQAHRES PIRIGNRRAS IEEKRGGNNQ NGNRVSTRNN SGYKNEDGFR RDGYKPRGSG VNGGRGYGRR
401: NSESNGDGKA YQNNGHGNTE AKN

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IT98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.