CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94739	Canola	cytosol	93.14	92.68
Bra033707.1-P	Field mustard	cytosol	98.04	91.32
AT5G43960.1	Thale cress	cytosol	81.86	74.22
CDY13135	Canola	mitochondrion	81.86	72.29
CDY36961	Canola	cytosol	81.13	70.28
KRH67452	Soybean	cytosol	50.49	45.58
KRG95733	Soybean	cytosol	50.0	45.33
VIT_07s0005g04300.t01	Wine grape	cytosol	49.51	43.44
Solyc06g083730.2.1	Tomato	nucleus	46.08	41.32
PGSC0003DMT400051923	Potato	cytosol	46.32	40.82
CDY42844	Canola	cytosol	30.39	27.87
CDY16827	Canola	cytosol	29.9	26.87
CDY23092	Canola	mitochondrion	28.92	25.05
CDX77365	Canola	cytosol	28.92	24.89
CDY00813	Canola	cytosol	28.68	24.38
CDX85353	Canola	cytosol	27.45	24.14
CDY02179	Canola	plastid	29.17	23.61
CDX87195	Canola	plastid	29.66	23.27
CDX86290	Canola	cytosol	27.21	22.65
CDY51206	Canola	cytosol	22.55	22.44
CDX98124	Canola	cytosol	21.81	22.19
CDY47006	Canola	cytosol	23.53	22.17
CDY36616	Canola	cytosol	22.06	22.11
CDY02983	Canola	cytosol	21.81	21.81
CDY36405	Canola	cytosol	21.57	21.73
CDY40904	Canola	nucleus	19.85	18.79
CDY50308	Canola	cytosol	18.14	17.7
CDY54146	Canola	cytosol	18.63	17.31
CDY07356	Canola	cytosol	16.67	17.22
CDY04271	Canola	cytosol	17.65	16.74
CDY04270	Canola	cytosol	16.91	16.55
CDX95953	Canola	cytosol	18.87	16.45
CDY07355	Canola	cytosol	17.65	13.77

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078GB61	UniProt:A0A078GB61	EnsemblPlants:CDY22322
ProteinID:CDY22322	ProteinID:CDY22322.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00018795001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EF3C38	SEG:seg	:	:	:

Description

BnaA06g36440DBnaA06g36440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB61]

Coordinates

chrLK032130:+:117474..119873

Molecular Weight (calculated)

45270.5 Da

IEP (calculated)

4.903

GRAVY (calculated)

-0.623

Length

408 amino acids

Sequence
(BLAST)

001: MIRVDGDSSD TAVTLLHIHN MVMSLNFTAI EVKTINSVES WEGGVLVAIS GSVKTKEFIN RRSFMHTFFL APQEKGYFVL NDIFQFIDEG LVFSHHQSSC
101: LSETKHEVQL NHPSPHPEPQ VHDDYVLEQE ASDYVNAVQI NDDLVDKYSL QEDLHQPLHE DYNEDEVAVE ETPREEVVHE PRAAPPPEEP VGEKSKMSYA
201: SILRVAKEAA AVPVAATQPS YNRNSLENND WDQQLRSPSP QLAAPPASAQ QSNAFTDYGA ETDGGFGFED FEIKSVYVRN LPSNISASEI EEEFKNFGTI
301: KPDGIFLRTR KDVIGVCYAF VEYEDMASVE KAIKASPIYL GGRQVYIEGR RPNPAGVRGA RGRGRGRGGY PTEAPRGRFG SRGVSGRGNQ EGGGDYRPRG
401: NGNYRGGR

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.