Factsheet for Bra033707.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22322	Canola	cytosol	91.32	98.04
AT5G43960.1	Thale cress	cytosol	82.42	80.22
Bra027517.1-P	Field mustard	cytosol, mitochondrion	81.28	77.06
KRH67452	Soybean	cytosol	51.83	50.22
KRG95733	Soybean	cytosol	51.37	50.0
VIT_07s0005g04300.t01	Wine grape	cytosol	51.37	48.39
Solyc06g083730.2.1	Tomato	nucleus	47.95	46.15
PGSC0003DMT400051923	Potato	cytosol	48.4	45.79
Bra029343.1-P	Field mustard	cytosol	31.05	30.29
Bra012989.1-P	Field mustard	cytosol	30.59	29.78
Bra035946.1-P	Field mustard	cytosol	30.82	29.74
Bra015105.1-P	Field mustard	cytosol	29.45	27.8
Bra037472.1-P	Field mustard	cytosol	28.31	25.31
Bra019707.1-P	Field mustard	cytosol	22.6	24.63
Bra025122.1-P	Field mustard	cytosol	21.46	23.5
Bra004006.1-P	Field mustard	cytosol	18.04	20.0
Bra004367.1-P	Field mustard	cytosol	19.18	17.72
Bra038318.1-P	Field mustard	cytosol	19.41	16.63
Bra004005.1-P	Field mustard	cytosol	18.72	15.68

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra033707	EnsemblPlants:Bra033707.1	EnsemblPlants:Bra033707.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4EY17	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF29
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000253F71D
SEG:seg	:	:	:	:	:

Description

AT5G43960 (E=3e-141) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA06:+:25496191..25498469

Molecular Weight (calculated)

48794.7 Da

IEP (calculated)

4.918

GRAVY (calculated)

-0.596

Length

438 amino acids

Sequence
(BLAST)

001: MVGSYFVEQY CQVLQQQPHL IHQFYSESSK MIRVDGDSSD SAVTLLHIHN MVMSLNFTAI EVKTINSVES WEGGVLVAIS GSVKTKEFIN RRSFMHTFFL
101: APQEKGYFVL NDIFQFIDEG LVFSHHQSSC LSETKHEVRL NPPSPHPEPQ VHDDYVLEQE ASDYVNAVQI NDDLVDKYSL QEDLHQPLHE DYYEDEVAVE
201: ETPREEVVHE PRAAPPPEEP VGEKSKMSYA SILRVAKEAA AVPVAATQPS YNKNSLENND WDQQLRSPSP QLAAPPASAQ QSNAFTDYGA EADGGFGFED
301: FEIKSVYVRN LPSNISASEI EEEFKNFGTI KPDGVFLRTR KDVIGVCYAF VEYEDMASVE NAIKASPIYL GGRQVYIEGR RPNPAGVRGA RGRGRGRGGY
401: PTEAPRGRFG SRGVSGRGNQ EGGGDYRPRG NGNYRGGR

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.