CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95733	Soybean	cytosol	93.81	94.22
VIT_07s0005g04300.t01	Wine grape	cytosol	59.07	57.42
AT5G43960.1	Thale cress	cytosol	53.98	54.22
Solyc06g083730.2.1	Tomato	nucleus	53.1	52.75
PGSC0003DMT400051923	Potato	cytosol	53.98	52.7
Bra033707.1-P	Field mustard	cytosol	50.22	51.83
CDY22322	Canola	cytosol	45.58	50.49
CDX94739	Canola	cytosol	45.58	50.24
Bra027517.1-P	Field mustard	cytosol, mitochondrion	50.44	49.35
CDY13135	Canola	mitochondrion	50.44	49.35
KRH33563	Soybean	cytosol	50.88	48.83
CDY36961	Canola	cytosol	50.44	48.41
KRG90305	Soybean	cytosol	48.89	46.62
KRG92252	Soybean	cytosol	46.24	44.47
KRH03143	Soybean	cytosol, nucleus	33.19	32.61
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	29.42	32.28
KRH45051	Soybean	cytosol	32.74	32.03
KRH56802	Soybean	cytosol, nucleus	32.52	31.82
KRH46640	Soybean	cytosol	31.86	31.17
KRG99633	Soybean	cytosol	32.74	31.09
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	30.75	29.89
KRH01288	Soybean	cytosol	31.19	29.62
KRH57274	Soybean	cytosol, mitochondrion	12.17	25.58

Protein Annotations

EntrezGene:100787900	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02002059	EnsemblPlantsGene:GLYMA_03G167100
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0030529	UniProt:I1JP73	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KRH67452
ProteinID:KRH67452	ProteinID:KRH67452.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF29
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002963D7A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:38155448..38161838

Molecular Weight (calculated)

50046.2 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.466

Length

452 amino acids

Sequence
(BLAST)

001: MASSYPGSVS AAQVGSYFVG QYYQILRQQP NLVHQFYSDS SSMIRVDGDS VETAHDVLQI HSIVSLLNFT TIEIKTINSL DSWDGGVLVM VSGFVKIKDI
101: SGKRKFVQTF FLAPQEKGYF VMNDMFHYID DEVTYPNLVP VASETIDTQP HLSASLAEPP VSDYGLEEEA REYVNSVHID DDPVDEYSLP EHQQQLQEEL
201: ETEIVEEETP VQEASPPIHS IAHTVQEPPV ALVEESFEEP PKKTYASILR VSKGQPVLSA APQYAPQHSF KSAPPPSELN HVAQPAVQQS SSASMYVPES
301: GIEAAEEGYG LEEEDEVTSV YVRNLPANVT EAEIDQEFKN FGRIKPDGIF IRVRKEIGVC YAFVEFEDIV GVQNALQASP IQLAGRQVYI EERRPNSVGA
401: ARGGRRGRGR GSYQADAPRG RFGGRSMGRG GNQDSSDYTR LRGDGYLQRG SR

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.