Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94739 | Canola | cytosol | 76.22 | 83.66 |
| Bra033707.1-P | Field mustard | cytosol | 80.22 | 82.42 |
| CDY22322 | Canola | cytosol | 74.22 | 81.86 |
| CDY13135 | Canola | mitochondrion | 82.89 | 80.74 |
| Bra027517.1-P | Field mustard | cytosol, mitochondrion | 82.44 | 80.3 |
| CDY36961 | Canola | cytosol | 81.56 | 77.92 |
| KRH67452 | Soybean | cytosol | 54.22 | 53.98 |
| KRG95733 | Soybean | cytosol | 52.89 | 52.89 |
| VIT_07s0005g04300.t01 | Wine grape | cytosol | 53.11 | 51.4 |
| PGSC0003DMT400051923 | Potato | cytosol | 50.22 | 48.81 |
| Solyc06g083730.2.1 | Tomato | nucleus | 49.33 | 48.79 |
| AT5G60980.3 | Thale cress | cytosol | 30.89 | 30.22 |
| AT5G48650.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 27.56 | 27.07 |
| AT1G13730.1 | Thale cress | cytosol | 24.44 | 25.7 |
| AT3G25150.2 | Thale cress | plastid | 32.0 | 24.53 |
| AT2G03640.4 | Thale cress | nucleus | 24.44 | 24.28 |
| AT1G69250.1 | Thale cress | cytosol | 19.78 | 20.84 |
| AT3G07250.1 | Thale cress | nucleus | 23.11 | 15.36 |
| AT3G55540.1 | Thale cress | cytosol | 10.89 | 14.67 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | EntrezGene:834419 | ProteinID:AED95038.1 | ArrayExpress:AT5G43960 |
| EnsemblPlantsGene:AT5G43960 | RefSeq:AT5G43960 | TAIR:AT5G43960 | RefSeq:AT5G43960-TAIR-G | EnsemblPlants:AT5G43960.1 | TAIR:AT5G43960.1 |
| EMBL:AY080755 | EMBL:AY114017 | Unigene:At.24860 | ProteinID:BAB09056.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 |
| RefSeq:NP_199209.1 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF02136 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF29 | UniProt:Q9FND0 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54427 | SUPFAM:SSF54928 | UniParc:UPI00000A5EE6 |
| SEG:seg | : | : | : | : | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
Coordinates
chr5:-:17688788..17692014
Molecular Weight (calculated)
50125.0 Da
IEP (calculated)
4.645
GRAVY (calculated)
-0.629
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.