Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G69250.1 | Thale cress | cytosol | 24.25 | 18.97 |
| KRH50515 | Soybean | cytosol, endoplasmic reticulum, nucleus | 21.86 | 17.72 |
| AT1G13730.1 | Thale cress | cytosol | 21.56 | 16.82 |
| KRG89479 | Soybean | cytosol, endoplasmic reticulum, nucleus | 23.05 | 16.56 |
| AT2G03640.4 | Thale cress | nucleus | 20.36 | 15.01 |
| AT5G60980.3 | Thale cress | cytosol | 20.06 | 14.57 |
| AT5G48650.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 17.96 | 13.1 |
| Solyc05g012240.1.1 | Tomato | cytosol | 15.87 | 12.9 |
| AT3G25150.2 | Thale cress | plastid | 20.66 | 11.75 |
| AT5G43960.1 | Thale cress | cytosol | 14.67 | 10.89 |
| AT3G07250.1 | Thale cress | nucleus | 18.56 | 9.16 |
| PGSC0003DMT400072921 | Potato | cytosol | 17.07 | 9.02 |
| Solyc05g012230.2.1 | Tomato | extracellular | 5.99 | 4.87 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | EntrezGene:824719 | UniProt:A0A178VML8 | ProteinID:AEE79398.1 | ArrayExpress:AT3G55540 |
| EnsemblPlantsGene:AT3G55540 | RefSeq:AT3G55540 | TAIR:AT3G55540 | RefSeq:AT3G55540-TAIR-G | EnsemblPlants:AT3G55540.1 | TAIR:AT3G55540.1 |
| Unigene:At.53937 | ProteinID:CAB75912.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0030529 | InterPro:IPR018222 | RefSeq:NP_191113.1 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk |
| ProteinID:OAP07044.1 | PFAM:PF02136 | PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF41 | UniProt:Q9M2S5 |
| SUPFAM:SSF54427 | UniParc:UPI000009E0B9 | : | : | : | : |
Description
Nuclear transport factor 2 (NTF2) family protein [Source:UniProtKB/TrEMBL;Acc:Q9M2S5]
Coordinates
chr3:+:20598218..20599614
Molecular Weight (calculated)
38118.4 Da
IEP (calculated)
5.054
GRAVY (calculated)
-0.215
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSMIKDVDP SVLLANGFIQ SHFTNLNTSE ALANCFLQSY FLNLGVYPEV VQMMWYADDS VMTRPGPDGT MMSFTSPEAI QEQIVSCDYE GASFDVMSFA
101: AQSCNTSSED GAFIMVTGFL TCKDKQVRRR FVQSLYLARR QDRSYAIVND FLRYIDSIPA LPSVPESAGF VKVYYELPMR EELGLMYVNE SIMSRPTSTS
201: GRTMVEMPGL DAINKRVSNE HKRASNFILN SVDYQISRSF KDRMFIMVCG FVTLDDKTER KFLQFFYVTR CHNGSYVIYN DILRYVDVTP RDTLESSSQS
301: AAKPSTDVEL PYFMVKKGKL LSYFNNIDTQ NYPH
101: AQSCNTSSED GAFIMVTGFL TCKDKQVRRR FVQSLYLARR QDRSYAIVND FLRYIDSIPA LPSVPESAGF VKVYYELPMR EELGLMYVNE SIMSRPTSTS
201: GRTMVEMPGL DAINKRVSNE HKRASNFILN SVDYQISRSF KDRMFIMVCG FVTLDDKTER KFLQFFYVTR CHNGSYVIYN DILRYVDVTP RDTLESSSQS
301: AAKPSTDVEL PYFMVKKGKL LSYFNNIDTQ NYPH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.