Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012989.1-P | Field mustard | cytosol | 86.52 | 88.44 |
| CDY42844 | Canola | cytosol | 83.04 | 85.84 |
| Bra029343.1-P | Field mustard | cytosol | 83.04 | 85.08 |
| CDY16827 | Canola | cytosol | 83.48 | 84.58 |
| Bra035946.1-P | Field mustard | cytosol | 83.48 | 84.58 |
| CDY23092 | Canola | mitochondrion | 86.3 | 84.29 |
| CDY02179 | Canola | plastid | 86.96 | 79.37 |
| CDX87195 | Canola | plastid | 84.35 | 74.62 |
| CDY47006 | Canola | cytosol | 65.65 | 69.75 |
| KRH03143 | Soybean | cytosol, nucleus | 52.83 | 52.83 |
| KRH56802 | Soybean | cytosol, nucleus | 52.61 | 52.38 |
| VIT_17s0000g05240.t01 | Wine grape | golgi, mitochondrion | 51.52 | 47.4 |
| GSMUA_Achr4P00640_001 | Banana | cytosol | 36.3 | 43.15 |
| TraesCS7D01G414000.1 | Wheat | cytosol | 13.91 | 40.25 |
| TraesCS7B01G322100.1 | Wheat | cytosol | 13.91 | 40.25 |
| TraesCS7A01G421800.1 | Wheat | cytosol | 13.7 | 39.38 |
| AT1G13730.1 | Thale cress | cytosol | 29.78 | 32.01 |
| AT3G25150.2 | Thale cress | plastid | 40.65 | 31.86 |
| AT5G43960.1 | Thale cress | cytosol | 30.22 | 30.89 |
| Os03t0418800-01 | Rice | mitochondrion | 35.0 | 30.78 |
| KXG39124 | Sorghum | cytosol | 10.65 | 30.62 |
| AT5G48650.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 30.22 | 30.35 |
| AT1G69250.1 | Thale cress | cytosol | 27.61 | 29.74 |
| Os07t0603100-01 | Rice | extracellular | 36.74 | 29.7 |
| AT2G03640.4 | Thale cress | nucleus | 29.13 | 29.58 |
| TraesCS3D01G392700.1 | Wheat | cytosol, nucleus, plastid | 35.0 | 29.54 |
| TraesCS3B01G431000.2 | Wheat | cytosol | 35.0 | 29.43 |
| TraesCS3A01G398600.1 | Wheat | cytosol | 34.57 | 29.01 |
| HORVU3Hr1G089630.1 | Barley | cytosol | 34.13 | 28.91 |
| HORVU0Hr1G007150.3 | Barley | cytosol | 17.39 | 28.67 |
| Zm00001d047289_P003 | Maize | plasma membrane | 35.87 | 28.25 |
| EER94684 | Sorghum | cytosol | 35.43 | 26.29 |
| HORVU2Hr1G032730.1 | Barley | cytosol, nucleus, peroxisome | 34.13 | 25.2 |
| TraesCS2B01G202200.1 | Wheat | cytosol | 34.13 | 25.04 |
| TraesCS2D01G183500.1 | Wheat | cytosol | 34.13 | 24.92 |
| TraesCS2A01G176100.1 | Wheat | cytosol, nucleus, plastid | 33.7 | 24.6 |
| Zm00001d022071_P002 | Maize | cytosol | 31.3 | 24.57 |
| GSMUA_Achr1P24520_001 | Banana | nucleus | 43.7 | 20.34 |
| AT3G55540.1 | Thale cress | cytosol | 14.57 | 20.06 |
| OQU90215 | Sorghum | cytosol | 33.48 | 19.9 |
| AT3G07250.1 | Thale cress | nucleus | 22.17 | 15.07 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | EntrezGene:836219 | ProteinID:AED97407.1 | ProteinID:ANM69708.1 |
| ArrayExpress:AT5G60980 | EnsemblPlantsGene:AT5G60980 | RefSeq:AT5G60980 | TAIR:AT5G60980 | RefSeq:AT5G60980-TAIR-G | EnsemblPlants:AT5G60980.3 |
| EMBL:AY062108 | ProteinID:BAB10647.1 | EMBL:BT003010 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0030529 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:IPR018222 | RefSeq:NP_001331368.1 | RefSeq:NP_200906.2 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf |
| InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF02136 | PFscan:PS50102 | PFscan:PS50177 |
| PANTHER:PTHR10693 | PANTHER:PTHR10693:SF27 | UniProt:Q9FME2 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54427 | SUPFAM:SSF54928 | UniParc:UPI000000BE8C | SEG:seg | : | : |
Description
AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
Coordinates
chr5:+:24543236..24546317
Molecular Weight (calculated)
49546.2 Da
IEP (calculated)
5.811
GRAVY (calculated)
-0.729
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.