Factsheet for Os07t0603100-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G414000.1	Wheat	cytosol	14.76	52.83
TraesCS2B01G202200.1	Wheat	cytosol	57.47	52.15
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	57.65	52.06
TraesCS2D01G183500.1	Wheat	cytosol	57.47	51.9
TraesCS7A01G421800.1	Wheat	cytosol	14.41	51.25
TraesCS7B01G322100.1	Wheat	cytosol	14.24	50.94
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	55.71	50.88
Os03t0418800-01	Rice	mitochondrion	44.11	47.99
Solyc10g083060.1.1	Tomato	cytosol	6.85	46.43
Zm00001d022071_P002	Maize	cytosol	44.46	43.17
GSMUA_Achr4P00640_001	Banana	cytosol	27.59	40.57
KRH45051	Soybean	cytosol	30.93	38.1
Bra012989.1-P	Field mustard	cytosol	29.17	36.89
AT5G60980.3	Thale cress	cytosol	29.7	36.74
KRH01288	Soybean	cytosol	30.58	36.55
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	31.81	36.2
CDY42844	Canola	cytosol	28.3	36.18
Bra029343.1-P	Field mustard	cytosol	28.47	36.08
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	30.23	35.83
KRH56802	Soybean	cytosol, nucleus	28.82	35.5
KRH03143	Soybean	cytosol, nucleus	28.65	35.43
Os04t0372800-01	Rice	nucleus, plasma membrane	30.05	35.19
Solyc02g088920.2.1	Tomato	cytosol	24.25	34.94
CDY23092	Canola	mitochondrion	28.82	34.82
Bra035946.1-P	Field mustard	cytosol	27.77	34.8
CDY16827	Canola	cytosol	27.77	34.8
VIT_01s0011g00400.t01	Wine grape	cytosol	29.17	34.3
CDY02179	Canola	plastid	29.17	32.94
Solyc02g066830.2.1	Tomato	cytosol	23.02	32.83
OQU90215	Sorghum	cytosol	44.46	32.69
Solyc02g030530.1.1	Tomato	cytosol	15.82	31.58
VIT_14s0068g00310.t01	Wine grape	cytosol	29.0	31.19
CDY47006	Canola	cytosol	23.02	30.25
CDX87195	Canola	plastid	27.07	29.62
PGSC0003DMT400003713	Potato	cytosol	25.66	29.55
Solyc02g032790.1.1	Tomato	cytosol	14.41	27.15
KRH57274	Soybean	cytosol, mitochondrion	9.31	24.65
Os02t0131700-00	Rice	plastid	18.28	23.21
Solyc02g030490.1.1	Tomato	cytosol	10.02	23.17
Os04t0510500-01	Rice	cytosol	17.93	22.08
GSMUA_Achr1P24520_001	Banana	nucleus	32.51	18.72
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	0.88	0.92

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:4343835	EMBL:AK101352	ProteinID:BAC84474.1
ProteinID:BAD31715.1	ProteinID:BAF22124.1	ProteinID:BAT02535.1	ProteinID:EAZ40570.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2
InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os07g0603100	EnsemblPlants:Os07t0603100-01	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF26	UniProt:Q6YW02
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00001BF6DB
RefSeq:XP_015647886.1	SEG:seg	:	:	:	:

Description

Nucleotide-binding, alpha-beta plait domain containing protein. (Os07t0603100-01)

Coordinates

chr7:-:24654907..24659846

Molecular Weight (calculated)

62179.2 Da

IEP (calculated)

6.603

GRAVY (calculated)

-0.882

Length

569 amino acids

Sequence
(BLAST)

001: MAMQVGESVA PLSPQMIGNA FVQQYYNVLH SSPGQVCKFY HDSSTLGRPD SNGTMTSVTT LTAINDEFLS TDFSSCLIKL ENVDAQLSLN GGVHILVTGS
101: IGHNGTMRHR FSQSFFLAPQ ESGGYFVLND MLRYDSLQET LLTETNDSPQ ERLLTEINDS LPNHVDDNTH SVTFTSEPET SGNVNETADL ELPSAENVND
201: NVENLPANDS SPEENVLVEA CTEVVSSCAE NIPAAAPAPA PRASTQKDVT KQSYASVVKV TKEGTPTPPV AKPKPKPKPK PTAKVTDNVE KAVSSPVKPT
301: NAADTTSPND KNVLVEQGYS VYVKHLPYEC TTKDVEEKFR KFGAIRPGGI QVRHRQPDGF CFGFVEFESR QSMLAAIEAS PVSIGSKASI VEEKRTTTRV
401: VNGVTHIENN GNARGGRFQQ DNRGGGYRGD NFRGREAGFV NNGNYRDGDN MRNGFRNQNE YSGRGRGPQG NGYHQNGNGG GYHQNGNGYH QNGDGYHQNG
501: NRYNQNGNRY HQNGDEYYQN GNGNGHRQNG SGYYHQNGNG YRQDRIFHNG NGNGRPARFN GPRQTPVQA

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.