CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029343.1-P	Field mustard	cytosol	97.75	96.88
AT5G60980.3	Thale cress	cytosol	85.84	83.04
CDY16827	Canola	cytosol	83.15	81.5
CDY23092	Canola	mitochondrion	83.37	78.77
CDY47006	Canola	cytosol	73.71	75.75
CDY02179	Canola	plastid	85.17	75.2
CDX87195	Canola	plastid	82.7	70.77
KRH56802	Soybean	cytosol, nucleus	52.58	50.65
KRH03143	Soybean	cytosol, nucleus	52.13	50.43
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	50.34	44.8
GSMUA_Achr4P00640_001	Banana	cytosol	35.96	41.34
TraesCS7D01G414000.1	Wheat	cytosol	14.16	39.62
TraesCS7B01G322100.1	Wheat	cytosol	13.93	38.99
TraesCS7A01G421800.1	Wheat	cytosol	13.71	38.12
CDX77365	Canola	cytosol	38.88	36.5
CDY00813	Canola	cytosol	39.1	36.25
CDX98124	Canola	cytosol	31.91	35.41
CDY36405	Canola	cytosol	31.46	34.57
CDY02983	Canola	cytosol	28.76	31.37
KXG39124	Sorghum	cytosol	11.24	31.25
CDY36616	Canola	cytosol	28.09	30.71
CDY51206	Canola	cytosol	28.09	30.49
CDX94739	Canola	cytosol	28.09	30.49
CDY22322	Canola	cytosol	27.87	30.39
CDY50308	Canola	cytosol	28.54	30.38
CDY13135	Canola	mitochondrion	31.24	30.09
Os03t0418800-01	Rice	mitochondrion	35.28	30.02
CDY54146	Canola	cytosol	29.44	29.84
CDX85353	Canola	cytosol	31.01	29.74
CDY36961	Canola	cytosol	31.01	29.3
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	35.51	28.99
TraesCS3B01G431000.2	Wheat	cytosol	35.51	28.88
HORVU0Hr1G007150.3	Barley	cytosol	17.98	28.67
TraesCS3A01G398600.1	Wheat	cytosol	35.28	28.65
CDY07356	Canola	cytosol	25.39	28.61
CDY40904	Canola	nucleus	27.64	28.54
CDX86290	Canola	cytosol	31.24	28.37
HORVU3Hr1G089630.1	Barley	cytosol	34.61	28.36
Os07t0603100-01	Rice	extracellular	36.18	28.3
Zm00001d047289_P003	Maize	plasma membrane	37.08	28.25
CDY04270	Canola	cytosol	26.07	27.82
CDY04271	Canola	cytosol	26.07	26.98
EER94684	Sorghum	cytosol	36.4	26.13
CDX95953	Canola	cytosol	27.42	26.07
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	34.16	24.4
TraesCS2B01G202200.1	Wheat	cytosol	34.16	24.24
TraesCS2D01G183500.1	Wheat	cytosol	34.16	24.13
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	33.71	23.81
Zm00001d022071_P002	Maize	cytosol	30.79	23.38
CDY07355	Canola	cytosol	26.74	22.75
GSMUA_Achr1P24520_001	Banana	nucleus	43.37	19.53
OQU90215	Sorghum	cytosol	32.81	18.86

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078HZS6	UniProt:A0A078HZS6	EnsemblPlants:CDY42844
ProteinID:CDY42844	ProteinID:CDY42844.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00075535001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EF28BE	SEG:seg	:	:	:

Description

BnaAnng06690DBnaAnng06690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HZS6]

Coordinates

chrLK032536:+:106029..108360

Molecular Weight (calculated)

47457.9 Da

IEP (calculated)

5.501

GRAVY (calculated)

-0.644

Length

445 amino acids

Sequence
(BLAST)

001: MAHSTSPGAE VVGRAFVEQY YHILHQSPGL VHRFYQDSSM LTRPDVTGSV TTVTTMQAIN EKIMSLKYED YTAEIETADA QESYERGVIV LVTGCLTGSD
101: NVRKRFSQTF FLAPQDKGYF VLNDVFRFLE EKDVTAHNGT TRDVQAPVEP ERVVVSHEAE VEPEPVASIE EDLDNVAEVY DPCEKDEGVV VDAEPIQPPP
201: QLSHSEVPSV PQGDAPKHSY ASILKLMNSS PAPARVVKPR PGPVSNNQRP TATPPAASEA SGVENVQNSS NVDVEDDGHS IYVRNLPFDT TPTQLEEVFK
301: SFGGIKHEGI QIRSNKQGFC FGFVEFETSS GKQSALEASP VTIGDRQVVL EEKKPNRGNS GGGGRGRYFG GRGGFRNESF KGGRGGGGGG RGGYGRGEFS
401: GSRPKSSNTR SGGEGYQRVP QNGGGSGRGG GGGGGRGGPR GGASS

Best Arabidopsis Sequence Match ( AT5G60980.4 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QGFCFGFVEF ETSSGKQSAL EASPVTIGDR QAVVEEKKTN SRGGGNNGGS RGRYFSGRGS FRNESFKGGR
401: GGGGRGGYGR GGGEFSGRPK SSNPRNGGEG YQRVPQNGGG GRGGRGEGGR GGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.