CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004367.1-P	Field mustard	cytosol	95.3	94.09
CDY40904	Canola	nucleus	86.11	93.5
CDY04270	Canola	cytosol	56.62	63.55
CDY04271	Canola	cytosol	57.48	62.56
CDY07356	Canola	cytosol	52.14	61.77
CDY50308	Canola	cytosol	53.21	59.57
CDY54146	Canola	cytosol	54.91	58.54
AT1G69250.1	Thale cress	cytosol	48.08	52.69
CDY07355	Canola	cytosol	58.76	52.58
CDX98124	Canola	cytosol	27.99	32.67
CDY02983	Canola	cytosol	27.56	31.62
CDY51206	Canola	cytosol	27.56	31.46
CDY36616	Canola	cytosol	27.35	31.45
CDY36405	Canola	cytosol	26.71	30.86
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	26.92	30.58
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	29.06	29.25
CDY42844	Canola	cytosol	26.07	27.42
CDY16827	Canola	cytosol	26.28	27.09
CDY47006	Canola	cytosol	24.36	26.33
CDY23092	Canola	mitochondrion	25.43	25.27
CDX77365	Canola	cytosol	24.36	24.05
CDY02179	Canola	plastid	25.85	24.01
CDY00813	Canola	cytosol	24.36	23.75
CDX87195	Canola	plastid	25.85	23.27
CDX85353	Canola	cytosol	22.86	23.06
CDX86290	Canola	cytosol	23.5	22.45
Solyc05g012240.1.1	Tomato	cytosol	19.02	21.65
CDY13135	Canola	mitochondrion	19.87	20.13
CDY36961	Canola	cytosol	19.23	19.11
CDX94739	Canola	cytosol	16.67	19.02
CDY22322	Canola	cytosol	16.45	18.87
PGSC0003DMT400072921	Potato	cytosol	18.8	13.92
Solyc05g012230.2.1	Tomato	extracellular	5.98	6.81

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078E998	EnsemblPlants:CDX95953	ProteinID:CDX95953
ProteinID:CDX95953.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00101970001	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0004EE8DA6
SEG:seg	:	:	:	:	:

Description

BnaA07g27780D

Coordinates

chrLK031892:-:238749..241922

Molecular Weight (calculated)

50423.7 Da

IEP (calculated)

9.460

GRAVY (calculated)

-0.497

Length

468 amino acids

Sequence
(BLAST)

001: MAAAEEGAVV HPSHEEISEA FVNQYYHIMV NATDEAYRLY VDGSVITRPG GRPHGPMLSF TSLQAIKEHY LTCEYKGTTY DVLSVDSQRS LQDGILIMVV
101: GFLTGKDNLK RKFSQTFYLA PQDKAYVVVN DMYRFVDEEG SSLPPTVVES VPEAEVAKPV DEVSKTEPVQ KVIDDAPAKK SVKAAEAKKV VAGAAPAPVA
201: AQKPKEPIAE TAADGAKKSY AAMVQSLSRN AAPFQAKAAP VQKPRSMAPP PKARAAAPAP AVVGKPEKKS DQRIVDEPGT SVFVSNLPMD AKAPQLYELF
301: KDFGPIKEGG VQIRSSRASG RCFGFVSFES VASVQSMLKA AKTNPFKLGE HKLRVKEKQG KLLFLEYDGK QSGGRSGSKA QNGSVDESKT PTGSVDESKT
401: PSGSADGSKS ENGSAAGGED DDGFKTITSR RNRRGNGDKK NSGTPKIRRF DHMVADLTRE MTTFIILW

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.