Factsheet for Bra004367.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95953	Canola	cytosol	94.09	95.3
Bra004006.1-P	Field mustard	cytosol	52.11	62.53
AT1G69250.1	Thale cress	cytosol	47.05	52.22
Bra004005.1-P	Field mustard	cytosol	57.38	52.01
Bra038318.1-P	Field mustard	cytosol	53.16	49.32
Bra019707.1-P	Field mustard	cytosol	27.64	32.59
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	26.58	30.58
Bra025122.1-P	Field mustard	cytosol	25.11	29.75
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	28.69	29.25
Bra029343.1-P	Field mustard	cytosol	26.16	27.62
Bra035946.1-P	Field mustard	cytosol	25.95	27.09
Bra012989.1-P	Field mustard	cytosol	25.53	26.89
Bra015105.1-P	Field mustard	cytosol	24.05	24.57
Bra037472.1-P	Field mustard	cytosol	22.78	22.04
Solyc05g012240.1.1	Tomato	cytosol	18.57	21.41
Bra027517.1-P	Field mustard	cytosol, mitochondrion	19.62	20.13
Bra033707.1-P	Field mustard	cytosol	17.72	19.18
PGSC0003DMT400072921	Potato	cytosol	18.35	13.77
Solyc05g012230.2.1	Tomato	extracellular	5.91	6.81

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra004367	EnsemblPlants:Bra004367.1	EnsemblPlants:Bra004367.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4CJI3	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF41
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002541833
SEG:seg	:	:	:	:	:

Description

AT1G69250 (E=9e-091) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA07:+:18269625..18273352

Molecular Weight (calculated)

50976.2 Da

IEP (calculated)

9.322

GRAVY (calculated)

-0.526

Length

474 amino acids

Sequence
(BLAST)

001: MAAAEEGAVV HPSHEEISEA FVNQYYHIMV NATDEAYRLY VDGSVITRPG GGPHGPMLSF TSLQAIKEHY LTCEYKGTTY DVLSVDSQRS LRDGILIMVV
101: GFLTGKDNLK RKFSQTFYLA PQDKAYVVVN DMYRFVDEEE SSLPPTVVES VPEAEVAKPV DEVSKTEQVK KVIDDAPAKK SVKAAEAKKV VAGAAPPPVA
201: AQKPKEPIAE TAADGAKKSY AAMVQSLLRN AAPFQAKAAP VQKPRSMAPP AKARAAAPAP AVVGKPERKS DQRIVDEPGT SVFVSNLPMD AKAPQLYELF
301: KDFGPIKEGG VQIRSSRASG RCFGFVSFES VASVQSMLKA AKSNPFKLGE HKLRVKEKQG KLLFLEYDGS KQSGGRSGSK AQNGSVDESK TPTGSVDESK
401: TPSGSADGSK SENGSAAGGE DDDGFKTITS RRNRRGNGDK KNSVTPKIRR FDHMVADQGD DYTHHLMVKS TATA

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.