Factsheet for Bra027517.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13135	Canola	mitochondrion	98.48	98.48
AT5G43960.1	Thale cress	cytosol	80.3	82.44
Bra033707.1-P	Field mustard	cytosol	77.06	81.28
KRH67452	Soybean	cytosol	49.35	50.44
KRG95733	Soybean	cytosol	48.48	49.78
VIT_07s0005g04300.t01	Wine grape	cytosol	49.57	49.25
Solyc06g083730.2.1	Tomato	nucleus	46.54	47.25
PGSC0003DMT400051923	Potato	cytosol	46.97	46.87
Bra029343.1-P	Field mustard	cytosol	29.87	30.73
Bra012989.1-P	Field mustard	cytosol	29.22	30.0
Bra035946.1-P	Field mustard	cytosol	29.22	29.74
Bra015105.1-P	Field mustard	cytosol	27.71	27.59
Bra037472.1-P	Field mustard	cytosol	27.27	25.71
Bra019707.1-P	Field mustard	cytosol	22.08	25.37
Bra025122.1-P	Field mustard	cytosol	20.78	24.0
Bra004006.1-P	Field mustard	cytosol	18.61	21.77
Bra004367.1-P	Field mustard	cytosol	20.13	19.62
Bra038318.1-P	Field mustard	cytosol	19.05	17.22
Bra004005.1-P	Field mustard	cytosol	19.26	17.02

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra027517	EnsemblPlants:Bra027517.1	EnsemblPlants:Bra027517.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M4EFF5	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF29
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI00025427DB
SEG:seg	:	:	:	:	:

Description

AT5G43960 (E=1e-153) | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Coordinates

chrA09:+:13637416..13640020

Molecular Weight (calculated)

51784.2 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.617

Length

462 amino acids

Sequence
(BLAST)

001: MLRLVKTKTR FIKCVIEVGI FEYESKTYGV GSYFVGQYYQ VLQQQPDLIH QFYSDTSKAI RVDGDSSETA DSLLNIHNMV MSLNFTAIEV KTINSVESWE
101: GGVLVAVSGS VKTKEFSNRR SFMQTFFLAP QEKGYFVLND IFQFINDGTL SYHQPSYLSE TKGDEAQLNP PNSHPEEPQV PDYVLEQEAR DYVDAVQIKD
201: DPVDKYSLQE DQHHEDYEDE VEEVEETPRE EVVVDVVHES RAAPPEEPPV GEKSKMSYAS ILRVAKEAAA APVVSTQPSH NRNSQEINEW DQPLMTPSPQ
301: VAAPLAPVQQ PYVTDYGAEA EDGFGFEDFE MKSVYVRNLP SDISASEIEE EFKNFGTIKP DGVFLRTRKD VVGVCYAFVE FEDMTSVENA IKASPIYLGG
401: RHVYIEGRRP NPAGVRGARR GGRGRGGYPT EAPRGRFGSS RGNRDGGGDY RARGNGYNRV GR

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.