Factsheet for VIT_07s0005g04300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67452	Soybean	cytosol	57.42	59.07
KRG95733	Soybean	cytosol	56.13	58.0
VIT_05s0049g01940.t01	Wine grape	cytosol	55.48	54.32
AT5G43960.1	Thale cress	cytosol	51.4	53.11
Solyc06g083730.2.1	Tomato	nucleus	50.97	52.09
PGSC0003DMT400051923	Potato	cytosol	51.61	51.84
Bra033707.1-P	Field mustard	cytosol	48.39	51.37
CDX94739	Canola	cytosol	44.73	50.73
Bra027517.1-P	Field mustard	cytosol, mitochondrion	49.25	49.57
CDY13135	Canola	mitochondrion	49.25	49.57
CDY22322	Canola	cytosol	43.44	49.51
CDY36961	Canola	cytosol	48.6	47.98
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	29.89	27.8
VIT_01s0011g00400.t01	Wine grape	cytosol	27.53	26.45
VIT_00s0216g00030.t01	Wine grape	cytosol	28.6	25.19
VIT_14s0068g00310.t01	Wine grape	cytosol	28.39	24.95
VIT_00s2623g00010.t01	Wine grape	cytosol	14.19	23.66

Protein Annotations

EntrezGene:100249710	wikigene:100249710	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:AM424139
ProteinID:CAN77842	ProteinID:CAN77842.1	ProteinID:CCB60173	ProteinID:CCB60173.1	UniProt:F6HZQ7	EMBL:FN596502
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	EntrezGene:LOC100249710	wikigene:LOC100249710	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	TIGR:TC56636	TIGR:TC66139	UniParc:UPI000210A2C4	ArrayExpress:VIT_07s0005g04300	EnsemblPlantsGene:VIT_07s0005g04300
EnsemblPlants:VIT_07s0005g04300.t01	unigene:Vvi.11941	RefSeq:XP_002272650	RefSeq:XP_002272650.2	RefSeq:XP_010652417.1	RefSeq:XP_010652418.1
RefSeq:XP_010652420.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:7426312..7436068

Molecular Weight (calculated)

51273.9 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.568

Length

465 amino acids

Sequence
(BLAST)

001: MASTYPASVT ASEVGSYFVS QYYHVLRQQP DFVHQFYTDS STMIRIDGDS KESASAMLDI HALITSLNYT GINIKTINAV ESWNGGILVV VSGSVKAKDF
101: SGRKFMETFF LAPQEKGFYV LNDIFQFVNE EMIPQNSAAI VSENEVNTQS SASNSIPEPT VSSYALEEEA RDYINSVHLE DDQVDNYSHP ENPIDNYSHP
201: EHPIDDYSIP DHPVDSYTHS EQQQQQDFEV ESSVEEPAVE ESSASLQNVA NMVQEPQAAY VEEPVGEPPK KTYASILRAK GQPSSSVAAQ PVLNKISPPA
301: SEWNYTHHSS VQPSNYPSSL VPEYGVEAVE EGSALEEGES GSVYVRNLPP SVSTDDIEQE FKNFGRIKPG GVFIRNRMES GVCYAFVEFE DILGVQNAIK
401: ASPIQLGGRQ VYIEERRANS SSTSRGGRRG RGRGSYQTDA PRARVGGRGS VARGNGFLQR GFRQD

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.