Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400051923 | Potato | cytosol | 95.16 | 93.52 |
| KRH67452 | Soybean | cytosol | 52.75 | 53.1 |
| KRG95733 | Soybean | cytosol | 51.87 | 52.44 |
| VIT_07s0005g04300.t01 | Wine grape | cytosol | 52.09 | 50.97 |
| AT5G43960.1 | Thale cress | cytosol | 48.79 | 49.33 |
| Bra033707.1-P | Field mustard | cytosol | 46.15 | 47.95 |
| CDY13135 | Canola | mitochondrion | 47.47 | 46.75 |
| CDX94739 | Canola | cytosol | 41.98 | 46.59 |
| Bra027517.1-P | Field mustard | cytosol, mitochondrion | 47.25 | 46.54 |
| CDY36961 | Canola | cytosol | 47.91 | 46.28 |
| CDY22322 | Canola | cytosol | 41.32 | 46.08 |
| Solyc09g090940.2.1 | Tomato | nucleus | 44.84 | 43.59 |
| Solyc02g030530.1.1 | Tomato | cytosol | 18.9 | 30.18 |
| Solyc02g066830.2.1 | Tomato | cytosol | 24.62 | 28.07 |
| Solyc06g007780.2.1 | Tomato | cytosol | 28.79 | 27.41 |
| Solyc10g083060.1.1 | Tomato | cytosol | 5.05 | 27.38 |
| Solyc06g083300.2.1 | Tomato | nucleus | 28.57 | 27.31 |
| Solyc09g059310.2.1 | Tomato | extracellular, nucleus | 28.35 | 27.22 |
| Solyc02g088920.2.1 | Tomato | cytosol | 22.86 | 26.33 |
| Solyc02g032790.1.1 | Tomato | cytosol | 16.04 | 24.17 |
| Solyc05g012240.1.1 | Tomato | cytosol | 20.22 | 22.38 |
| Solyc02g030490.1.1 | Tomato | cytosol | 11.65 | 21.54 |
| Solyc05g012230.2.1 | Tomato | extracellular | 6.15 | 6.81 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003729 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0030529 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 |
| UniProt:K4CAM8 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFAM:PF02136 | PFscan:PS50102 | PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF29 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54427 | SUPFAM:SSF54928 | EnsemblPlantsGene:Solyc06g083730.2 | EnsemblPlants:Solyc06g083730.2.1 |
| UniParc:UPI000276B5E9 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:49075456..49082773
Molecular Weight (calculated)
50038.6 Da
IEP (calculated)
4.291
GRAVY (calculated)
-0.531
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSYSTPIG ATQVGSFFVQ QYYQVLQQQP DYVHQFYTDA SSIVRVDGDS NESASALVQI HTLIMSMSFS GIKIKTINSL ESWNGGVLVV ASGSVKLRDI
101: NGWRDFVQTF LLAPQEKGYF VLNDVFHFVN EEQSEVIQAP VGSQNNLDAQ PTSSNPLAEP PAHDYALEVE ATEYVNSVNI QGSDAVEEYS YPEHDQENLY
201: EAEAEYESDE YEHDEAELEA DVPEETHLGE ETTQVRSFEE ETSFPSNVVE VVPEPEPAAE EPVGEPSKLS YASILRAPKG PAPSVRIQPS YTKSAPPVSE
301: WQAPVEQPIS MPPAAPEASL DLADEGFSQE GESKSVYVRN LPSTVSSLDI LQEFKNFGKI KQDGVFLRNR KDVGICYAFV EFEEVQGVQN AIKASPIHLA
401: GRQVYIEERR PTSSSISRGG RSGRGRGRGG RSAGRTFGRG STPDDRVKSN GYRGI
101: NGWRDFVQTF LLAPQEKGYF VLNDVFHFVN EEQSEVIQAP VGSQNNLDAQ PTSSNPLAEP PAHDYALEVE ATEYVNSVNI QGSDAVEEYS YPEHDQENLY
201: EAEAEYESDE YEHDEAELEA DVPEETHLGE ETTQVRSFEE ETSFPSNVVE VVPEPEPAAE EPVGEPSKLS YASILRAPKG PAPSVRIQPS YTKSAPPVSE
301: WQAPVEQPIS MPPAAPEASL DLADEGFSQE GESKSVYVRN LPSTVSSLDI LQEFKNFGKI KQDGVFLRNR KDVGICYAFV EFEEVQGVQN AIKASPIHLA
401: GRQVYIEERR PTSSSISRGG RSGRGRGRGG RSAGRTFGRG STPDDRVKSN GYRGI
001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.