Factsheet for Solyc06g083300.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g119040.2.1
Solyc06g069010.2.1
Solyc12g040510.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48650.1	Solyc03g119040.2.1	AT1G48630.1	21798944
AT5G48650.1	Solyc06g069010.2.1	AT1G48630.1	21798944
AT5G48650.1	Solyc12g040510.1.1	AT1G48630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051956	Potato	cytosol	96.01	95.81
Solyc09g059310.2.1	Tomato	extracellular, nucleus	75.84	76.16
Solyc06g007780.2.1	Tomato	cytosol	70.8	70.5
VIT_00s0216g00030.t01	Wine grape	cytosol	61.34	55.3
KRH46640	Soybean	cytosol	51.68	53.25
KRG99633	Soybean	cytosol	53.15	53.15
VIT_00s2623g00010.t01	Wine grape	cytosol	28.15	48.03
Bra015105.1-P	Field mustard	cytosol	46.43	47.63
CDX77365	Canola	cytosol	46.64	46.84
CDY00813	Canola	cytosol	46.01	45.62
Solyc10g083060.1.1	Tomato	cytosol	7.77	44.05
Solyc02g088920.2.1	Tomato	cytosol	35.5	42.78
Solyc02g066830.2.1	Tomato	cytosol	34.45	41.1
AT3G25150.2	Thale cress	plastid	48.74	39.52
Solyc02g030530.1.1	Tomato	cytosol	23.32	38.95
Solyc02g032790.1.1	Tomato	cytosol	23.74	37.42
CDX85353	Canola	cytosol	35.08	35.99
AT5G48650.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	33.4	34.72
CDX86290	Canola	cytosol	35.5	34.49
Bra037472.1-P	Field mustard	cytosol	34.66	33.67
Solyc02g030490.1.1	Tomato	cytosol	16.39	31.71
Solyc09g090940.2.1	Tomato	nucleus	29.2	29.7
Solyc06g083730.2.1	Tomato	nucleus	27.31	28.57
Solyc05g012240.1.1	Tomato	cytosol	23.11	26.76
AT3G07250.1	Thale cress	nucleus	24.58	17.28
Solyc05g012230.2.1	Tomato	extracellular	8.61	9.98

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:K4CAI5
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc06g083300.2	EnsemblPlants:Solyc06g083300.2.1	UniParc:UPI0002765DD8
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:48765025..48769449

Molecular Weight (calculated)

50990.4 Da

IEP (calculated)

5.347

GRAVY (calculated)

-0.468

Length

476 amino acids

Sequence
(BLAST)

001: MAAEAAVAVA AVAPVSAQVV ANAFVQQYYH ILHHSPGLVF RFYQDISKLG RPEEDGSMGI TTTMQAINDK ILSLNYGDLR AEIKSVDAQE SFNGGVHVLV
101: TGYLTGKDNL VRNFCQTFFL APQDRGYFVL NDMFRYVETA SQHDTVQVPV TDAVAPVTPE QIVADPPTAP QNHIPEQSTP PAEEADVGEV YNPSENGDVL
201: IVEEEVPVSE VVHEVQDGSE VVAESDNKTG EVPKKSYASI VMHLKESAAT FSPPPAPAAR KPMTKSVVQV NQPAATTTDG PYSSSETIDN INDTEADGYS
301: IYIKGLPMSA TVALLADEFK KFGPIKNGGI QVRSNRQQGF CFGFVEFEVE SAVQKAIEAS PVLIGDRQAV VEEKRSTNSR LNARGGGRFQ SGRGGGFRND
401: VGGRGRGNYL GGRGYGRDDF HGRNEFNNRG GNRGGSSNRG GEGYRRADNT GGRMSRGGGM SNGTAKGPAP RYSATA

Best Arabidopsis Sequence Match ( AT3G25150.2 )
(BLAST)

001: MNFSVLLYIN SKATFFSSSS IFLFSRRSLF FSRFSCKTLT SAIAKEAFLR SSLRNFPVNR QLRLFQFLDR FFITSICAYL LRESSSHLAF ELDTDTHTAM
101: AMLGAQQVPA AACTPDMVGN AFVPQYYHIL HQSPEHVHRF YQEISKLGRP EENGLMSITS TLQAIDKKIM ALGYGVISAE IATVDTQESH GGGYIVLVTG
201: YLTGKDSVRR TFSQTFFLAP QETGYFVLND MFRFIDEGTV VHGNQIPVNN VQAPVNTYQD TAAAKEIPDD FVQEKYVQEN HAVKQTEVLS KSINEPEKVF
301: TPSEDEQVSA AEEALVTETV NEAPIEVQKV GESDSRTGEI PKRSYASIVK VMKENAAPMS ASRTPTKVEP KKQEDQAIHI PLPTPLSEKS DSGANVAVNE
401: NNQENERALG PSIYLKGLPL DATPALLENE FQKFGLIRTN GIQVRSQKGF CFGFVEFESA SSMQSAIEAS PVMLNGHKVV VEEKRSTARG NYRGRSTFGV
501: NTGYRNEGGR GRGSFGGGRG GYGRTDFNGY GNNRGNNRGG YANRANGDGG GFPRANGNNG RVRRGGGNDA NRATKPVDDA PRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.