Factsheet for Solyc02g066830.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g030530.1.1	Tomato	cytosol	61.15	85.61
Solyc02g032790.1.1	Tomato	cytosol	59.9	79.14
Solyc02g030490.1.1	Tomato	cytosol	47.87	77.64
Solyc02g088920.2.1	Tomato	cytosol	49.12	49.62
KRH45051	Soybean	cytosol	43.86	37.88
KRH57274	Soybean	cytosol, mitochondrion	20.05	37.21
KRH01288	Soybean	cytosol	42.61	35.71
VIT_14s0068g00310.t01	Wine grape	cytosol	46.12	34.78
Solyc06g083300.2.1	Tomato	nucleus	41.1	34.45
Solyc09g059310.2.1	Tomato	extracellular, nucleus	39.35	33.12
GSMUA_Achr4P00640_001	Banana	cytosol	32.08	33.07
Solyc06g007780.2.1	Tomato	cytosol	36.84	30.75
Os03t0418800-01	Rice	mitochondrion	36.09	27.53
KXG39124	Sorghum	cytosol	10.03	25.0
TraesCS7A01G421800.1	Wheat	cytosol	10.03	25.0
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	33.83	24.77
TraesCS3B01G431000.2	Wheat	cytosol	33.83	24.68
TraesCS3A01G398600.1	Wheat	cytosol	33.83	24.64
Solyc06g083730.2.1	Tomato	nucleus	28.07	24.62
HORVU3Hr1G089630.1	Barley	cytosol	33.08	24.31
TraesCS7D01G414000.1	Wheat	cytosol	9.52	23.9
Zm00001d047289_P003	Maize	plasma membrane	34.34	23.46
Solyc09g090940.2.1	Tomato	nucleus	27.07	23.08
Os07t0603100-01	Rice	extracellular	32.83	23.02
TraesCS7B01G322100.1	Wheat	cytosol	9.02	22.64
Zm00001d022071_P002	Maize	cytosol	31.83	21.67
EER94684	Sorghum	cytosol	33.08	21.29
Solyc05g012240.1.1	Tomato	cytosol	21.55	20.92
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	30.58	19.58
TraesCS2B01G202200.1	Wheat	cytosol	30.58	19.46
TraesCS2D01G183500.1	Wheat	cytosol	30.58	19.37
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	30.33	19.21
HORVU0Hr1G007150.3	Barley	cytosol	12.28	17.56
OQU90215	Sorghum	cytosol	32.33	16.67
GSMUA_Achr1P24520_001	Banana	nucleus	38.1	15.38
Solyc05g012230.2.1	Tomato	extracellular	8.27	8.03
Solyc10g083060.1.1	Tomato	cytosol	1.5	7.14

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:K4B715
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF25	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc02g066830.2	EnsemblPlants:Solyc02g066830.2.1	UniParc:UPI0002768DFC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:36986405..36990032

Molecular Weight (calculated)

43571.7 Da

IEP (calculated)

5.922

GRAVY (calculated)

-0.564

Length

399 amino acids

Sequence
(BLAST)

001: MILRIGTNIN TLICSLDYKN YKAEIRTADA QDSFKDAVVV LVTGCLTGRD KLKRKFAQTF FLAPQDKGYF VLNDVFRYVE DNEIDTVSEV LNGTEDVQSE
101: VLTPDPDLDQ AGSPAEEVQH VEEKANDSSV DGRQVADERE IVVETGSYFN EDQHPTNTES VNSVAQEYAP KKSYASIVSS QTKKGPTKIY VPTNTSRVAP
201: PKAVKQPVAV VAQNAAPESS NPTTTSGIDV PEANDAEDEA EGYSIYVRNL PLDVTVAQLE AEFKTYGPIK QGGVQVRSNR QQGFCFGFVE FEDMSSMNSA
301: IHASPIIMGA RQVVIEMKRT TTRVGSIRGR FSPRRGVFRN VNFRVRGNFG GGRSYGRSEF GGRDFSGRGR VQGGRGGESY QVRGRGGQRG GPSQSSATA

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.