CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57274	Soybean	cytosol, mitochondrion	41.13	88.37
KRH01288	Soybean	cytosol	90.69	88.03
Solyc10g083060.1.1	Tomato	cytosol	12.99	71.43
Solyc02g088920.2.1	Tomato	cytosol	46.75	54.68
VIT_14s0068g00310.t01	Wine grape	cytosol	60.61	52.93
KRH03143	Soybean	cytosol, nucleus	50.65	50.87
KRH56802	Soybean	cytosol, nucleus	49.78	49.78
GSMUA_Achr4P00640_001	Banana	cytosol	41.34	49.35
Solyc02g030530.1.1	Tomato	cytosol	28.79	46.67
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	41.34	46.36
PGSC0003DMT400003713	Potato	cytosol	48.7	45.55
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	44.81	44.52
Solyc02g066830.2.1	Tomato	cytosol	37.88	43.86
TraesCS7D01G414000.1	Wheat	cytosol	14.72	42.77
TraesCS7B01G322100.1	Wheat	cytosol	14.72	42.77
Solyc02g032790.1.1	Tomato	cytosol	27.71	42.38
TraesCS7A01G421800.1	Wheat	cytosol	14.29	41.25
KRH46640	Soybean	cytosol	40.48	40.48
KRG99633	Soybean	cytosol	41.34	40.13
Solyc02g030490.1.1	Tomato	cytosol	19.91	37.4
Os03t0418800-01	Rice	mitochondrion	39.83	35.18
HORVU3Hr1G089630.1	Barley	cytosol	38.74	32.97
TraesCS3B01G431000.2	Wheat	cytosol	38.96	32.91
TraesCS3A01G398600.1	Wheat	cytosol	38.96	32.85
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	38.74	32.84
KRH67452	Soybean	cytosol	32.03	32.74
KRG95733	Soybean	cytosol	31.17	32.0
HORVU0Hr1G007150.3	Barley	cytosol	18.83	31.18
Os07t0603100-01	Rice	extracellular	38.1	30.93
KXG39124	Sorghum	cytosol	10.61	30.62
Zm00001d047289_P003	Maize	plasma membrane	37.01	29.28
KRG90305	Soybean	cytosol	29.65	28.9
KRH33563	Soybean	cytosol	29.44	28.87
KRG92252	Soybean	cytosol	29.0	28.51
EER94684	Sorghum	cytosol	36.36	27.1
Zm00001d022071_P002	Maize	cytosol	33.77	26.62
TraesCS2B01G202200.1	Wheat	cytosol	35.28	26.0
TraesCS2D01G183500.1	Wheat	cytosol	35.28	25.87
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	35.06	25.71
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	34.42	25.52
GSMUA_Achr1P24520_001	Banana	nucleus	47.19	22.06
OQU90215	Sorghum	cytosol	35.5	21.19

Protein Annotations

EntrezGene:100805494	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02004984	EnsemblPlantsGene:GLYMA_08G246600
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150
GO:GO:0030529	UniProt:I1KWF6	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	ProteinID:KRH45050.1
EnsemblPlants:KRH45051	ProteinID:KRH45051	ProteinID:KRH45051.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF25	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI0001BA5F99	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:21331973..21339209

Molecular Weight (calculated)

49876.9 Da

IEP (calculated)

7.412

GRAVY (calculated)

-0.634

Length

462 amino acids

Sequence
(BLAST)

001: MALQTATPPT TPSAQVVGNA FVEQYYHILH HSPGSVYRFY QDSSVISRPD SSGVMTSVTT MKGINEKILS LNFKEFKAEI KTADAQKSYK EGVTVLVTGC
101: LTGKDNLRRK FAQSFFLAPQ DNGYFVLNDV FRYVEDHEPS ELPPVTGDGD SAAVTVTPEL EPSHVADSCA PEPTNSHVNK GQTVAENAYE LSNNHERQIP
201: VENEGNVESH FQSNGNDDSQ ATELASSAQD DAPKKSYASI VKVQKGSSVP TKVYVPTNTL KSGPNKTESK VVESVESTEV PEAALESVSN PESSDAHEEV
301: EGHSIYIRNL PLNVTVAQLE LEFKKFGPIK PGGIQVRNNK QQGYCFGFVE FLSLNSMNSA IQASPVPIGG RQAVVEIKRT TTRVGSGING TGRPRIPSGR
401: GGLRNDSFRG RGNYVGGRGY GRNDYVSRGG FSGRGRGHGE GYHQGRGRGG RSSGQKQNAV SN

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.