Factsheet for PGSC0003DMT400003713

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g088920.2.1	Tomato	cytosol	65.18	81.52
KRH45051	Soybean	cytosol	45.55	48.7
KRH01288	Soybean	cytosol	44.53	46.22
TraesCS7D01G414000.1	Wheat	cytosol	14.17	44.03
TraesCS7B01G322100.1	Wheat	cytosol	13.97	43.4
TraesCS7A01G421800.1	Wheat	cytosol	13.97	43.12
GSMUA_Achr4P00640_001	Banana	cytosol	33.6	42.89
PGSC0003DMT400053195	Potato	cytosol	21.05	40.62
VIT_14s0068g00310.t01	Wine grape	cytosol	42.91	40.08
KRH57274	Soybean	cytosol, mitochondrion	17.41	40.0
PGSC0003DMT400051956	Potato	cytosol	35.63	36.9
PGSC0003DMT400071822	Potato	cytosol, plastid	29.15	30.0
Os03t0418800-01	Rice	mitochondrion	29.55	27.92
KXG39124	Sorghum	cytosol	8.91	27.5
HORVU0Hr1G007150.3	Barley	cytosol	15.38	27.24
Os07t0603100-01	Rice	extracellular	29.55	25.66
TraesCS3A01G398600.1	Wheat	cytosol	27.94	25.18
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	27.73	25.14
TraesCS3B01G431000.2	Wheat	cytosol	27.73	25.05
HORVU3Hr1G089630.1	Barley	cytosol	26.92	24.49
PGSC0003DMT400051923	Potato	cytosol	22.87	24.41
Zm00001d047289_P003	Maize	plasma membrane	27.94	23.63
PGSC0003DMT400003781	Potato	cytosol	22.27	23.45
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	28.34	22.47
Zm00001d022071_P002	Maize	cytosol	26.32	22.18
EER94684	Sorghum	cytosol	27.53	21.94
TraesCS2D01G183500.1	Wheat	cytosol	27.53	21.59
TraesCS2B01G202200.1	Wheat	cytosol	27.33	21.53
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	27.33	21.43
OQU90215	Sorghum	cytosol	27.53	17.57
GSMUA_Achr1P24520_001	Banana	nucleus	35.02	17.51
PGSC0003DMT400072921	Potato	cytosol	20.65	16.14

Protein Annotations

EntrezGene:102583564	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:M0ZM69
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
EnsemblPlantsGene:PGSC0003DMG400001461	PGSC:PGSC0003DMG400001461	EnsemblPlants:PGSC0003DMT400003713	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF25	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI0002966B3A	:	:	:	:	:

Description

Ras-GTPase-activating protein-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001461]

Coordinates

chr2:+:45543989..45547184

Molecular Weight (calculated)

54305.2 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.317

Length

494 amino acids

Sequence
(BLAST)

001: MAMETTAIPS APAAQVIGNA FVEQYYQIQH HSPELVYRFY LDSSVLSRPN SNGVMTSVTT MKNINDMICS LGYKNYKAEI KTADAQQSYK DGVIVLVTGC
101: LTGKDNMRKQ FTQTFFLAPQ DKGYFVLNDV LRYAEQNETD NSSEMVNGVK DVAPVPLTPD PEAVHVLEPP NHRQPSSHAE DIQIVEEVVH GSLENEKLVG
201: DEREIMVGAE SYINAEPATS VSREDAPKKS YASIVSSQTK KGPTKIYVPS NSRMAPAKTE KQPVKSVAQA PGPESSIHTA SGGNASESKD AQYRAEGHSI
301: YIRNLPLNVT VAQLEVEFKR FGPIKQGGIQ VRSNRQQGFC FGFVEFEDLN SMNSAIQASP VTIGGLQADV EIKRTTSRGQ LQTTTNKLVI NFFSWSFIRT
401: VKITYCMLFG PQLLHINDTS AFSYFLLQLV TGEVVSLQEE EQGTEMTISG AVETLVQVEA MVEMTLLEDV AGIKEDEVVK VTNKEEGEAD GEVA

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.