Factsheet for VIT_14s0068g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083060.1.1	Tomato	cytosol	9.83	61.9
KRH45051	Soybean	cytosol	52.93	60.61
KRH01288	Soybean	cytosol	50.85	56.51
Solyc02g088920.2.1	Tomato	cytosol	38.37	51.39
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	48.2	51.0
KRH57274	Soybean	cytosol, mitochondrion	20.6	50.7
VIT_01s0011g00400.t01	Wine grape	cytosol	44.23	48.35
GSMUA_Achr4P00640_001	Banana	cytosol	34.78	47.55
Solyc02g066830.2.1	Tomato	cytosol	34.78	46.12
Solyc02g030530.1.1	Tomato	cytosol	24.01	44.56
PGSC0003DMT400003713	Potato	cytosol	40.08	42.91
TraesCS7D01G414000.1	Wheat	cytosol	12.85	42.77
TraesCS7B01G322100.1	Wheat	cytosol	12.85	42.77
Solyc02g032790.1.1	Tomato	cytosol	24.01	42.05
TraesCS7A01G421800.1	Wheat	cytosol	12.29	40.62
VIT_00s0216g00030.t01	Wine grape	cytosol	37.62	37.69
Solyc02g030490.1.1	Tomato	cytosol	17.39	37.4
Os03t0418800-01	Rice	mitochondrion	32.33	32.7
VIT_00s2623g00010.t01	Wine grape	cytosol	17.01	32.26
HORVU3Hr1G089630.1	Barley	cytosol	32.89	32.04
TraesCS3A01G398600.1	Wheat	cytosol	32.89	31.75
TraesCS3B01G431000.2	Wheat	cytosol	32.7	31.63
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	32.51	31.56
HORVU0Hr1G007150.3	Barley	cytosol	15.88	30.11
KXG39124	Sorghum	cytosol	9.07	30.0
VIT_05s0049g01940.t01	Wine grape	cytosol	26.28	29.26
Os07t0603100-01	Rice	extracellular	31.19	29.0
VIT_07s0005g04300.t01	Wine grape	cytosol	24.95	28.39
Zm00001d047289_P003	Maize	plasma membrane	30.81	27.91
EER94684	Sorghum	cytosol	31.38	26.77
Zm00001d022071_P002	Maize	cytosol	28.73	25.94
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	28.92	24.56
TraesCS2D01G183500.1	Wheat	cytosol	29.11	24.44
TraesCS2B01G202200.1	Wheat	cytosol	28.92	24.4
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	28.92	24.29
GSMUA_Achr1P24520_001	Banana	nucleus	41.02	21.96
OQU90215	Sorghum	cytosol	29.68	20.28

Protein Annotations

EntrezGene:100258271	wikigene:100258271	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	ProteinID:CCB46933
ProteinID:CCB46933.1	UniProt:F6H491	EMBL:FN595232	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EntrezGene:LOC100258271
wikigene:LOC100258271	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF25	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0001984C79	ArrayExpress:VIT_14s0068g00310
EnsemblPlantsGene:VIT_14s0068g00310	EnsemblPlants:VIT_14s0068g00310.t01	RefSeq:XP_002277093	RefSeq:XP_002277093.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:24001531..24018716

Molecular Weight (calculated)

57879.6 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.572

Length

529 amino acids

Sequence
(BLAST)

001: MAMQTENPQL PPSAEVVGNA FVEQYYYVLH RSPELVFRFY RDSSVMSWPD SNGLMSSVTT MQGINEKILS SEFKNRKTEI MTTDSQSSYE GGVIVLVTGC
101: LMTKDKRRKK FTQSFFLAPQ YNGYYVLNDV LRYIVDGEAL ETIPINGTND SPAVSLNQGP GHTHDPDPPV PDPATSVVED DEIVIEKVYD PLENEEQLVN
201: EEEDFTETQS HPIENDDSTI AESSSSSAQE DAPKKSYASI VKVMKGSSGS TKVYVPTKTT KVTPAKTENQ SPGLAAPAPV PESSVTSSIN APESSDAPEE
301: VEGHSIYIRN LPLNVTVSQL EAEFQKFGPI KQGGVQVRSN KQQAYCFGFV EFLSLSSMHS AIQASPIIIG DHQAVVEIKR TTTRVGSGRG GRFPSGRGVF
401: RGRGSFGGGR GFVRIEYGIR GEFSGRGRGP SGRSGGEGYR QGRGRAGRPS GHTQNAGSRS VERTRPAYRP SGQQWESFPH VHVSFPSRKY GAELHAAIAL
501: PAFPYRFIIR ASGEETEQTR HARLSATCR

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.