Factsheet for HORVU2Hr1G032730.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G202200.1	Wheat	cytosol	88.76	88.2
TraesCS2D01G183500.1	Wheat	cytosol	88.28	87.3
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	87.16	86.19
Os07t0603100-01	Rice	extracellular	50.88	55.71
Zm00001d022071_P002	Maize	cytosol	39.33	41.81
GSMUA_Achr4P00640_001	Banana	cytosol	24.24	39.02
HORVU3Hr1G089630.1	Barley	cytosol	33.39	38.31
Solyc10g083060.1.1	Tomato	cytosol	5.14	38.1
KRH45051	Soybean	cytosol	25.52	34.42
CDY42844	Canola	cytosol	24.4	34.16
AT5G60980.3	Thale cress	cytosol	25.2	34.13
Solyc02g088920.2.1	Tomato	cytosol	21.51	33.92
Bra029343.1-P	Field mustard	cytosol	24.4	33.85
Bra012989.1-P	Field mustard	cytosol	24.08	33.33
CDY16827	Canola	cytosol	24.24	33.26
Bra035946.1-P	Field mustard	cytosol	24.24	33.26
KRH01288	Soybean	cytosol	25.36	33.19
KRH56802	Soybean	cytosol, nucleus	24.4	32.9
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	26.16	32.6
KRH03143	Soybean	cytosol, nucleus	23.92	32.39
CDY23092	Canola	mitochondrion	23.92	31.63
VIT_01s0011g00400.t01	Wine grape	cytosol	24.4	31.41
Solyc02g030530.1.1	Tomato	cytosol	14.13	30.88
OQU90215	Sorghum	cytosol	38.04	30.62
Solyc02g066830.2.1	Tomato	cytosol	19.58	30.58
CDY02179	Canola	plastid	24.56	30.36
HORVU0Hr1G007150.3	Barley	cytosol	13.48	30.11
CDX87195	Canola	plastid	24.56	29.42
CDY47006	Canola	cytosol	20.22	29.1
VIT_14s0068g00310.t01	Wine grape	cytosol	24.56	28.92
HORVU2Hr1G042280.3	Barley	plastid	15.25	28.7
PGSC0003DMT400003713	Potato	cytosol	22.47	28.34
Solyc02g032790.1.1	Tomato	cytosol	12.84	26.49
KRH57274	Soybean	cytosol, mitochondrion	8.67	25.12
Solyc02g030490.1.1	Tomato	cytosol	9.15	23.17
GSMUA_Achr1P24520_001	Banana	nucleus	28.41	17.91
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	15.41	17.68
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	12.2	15.77

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:HORVU2Hr1G032730	EnsemblPlants:HORVU2Hr1G032730.1	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222
UniProt:M0UM44	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF26	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000296D5AD	SEG:seg

Description

No Description!

Coordinates

chrchr2H:+:128280290..128284226

Molecular Weight (calculated)

68936.5 Da

IEP (calculated)

6.471

GRAVY (calculated)

-0.851

Length

623 amino acids

Sequence
(BLAST)

001: MSMPTGNLFG PPHPNVIGNA FAQQYYRVLN GSPEHVHKFY HDESILGRPD SDGALASITT MDAINEHFLS TDLKGCLIQL DNVDTQPSHG CGVIILVTGS
101: FTMLDTVKHR FAQSFFLAPQ ETGGYFVLND VLRLAPEMPL AETNEALVDH VNGNTQIAPF LAEPETTSVK ESMDPELPSA GNISTNGEVI NPSAEMIPVD
201: AEVINLSAEN VSINDEVMDP SIETISIKEK VINSSGNENS QIKNDAIKIP EAVPTPASGQ KDFIKKTYAS IVKATNESIP PAPITKPKPK PRPNPTVKRA
301: ENVEKSSSVP AKTTHAADTA PPNDQNNSND QGYSIFVKNL PYNATIEMVE AEFSKFGPIK PRGIQVVHRP VDGFCFGFVQ FEYEKSMNAA IEVFKVRFGT
401: YVSYVEEKRT PKRVVNGVTH SEYNGNARGS RVLPDRGGYH GDNFRGQGTG YVNNGNYHDG DNFRGQGASF VNNNNYRDGE NFRGRGVGFV NNGNNYRDGN
501: NMRSDNRNQN EYSGHGRGPQ GNNDYRQNDS RQNRNDYRQD GNGYRLNGDD YRQNRDGYRQ NGDDYRQNRD GYRQNGEDYL QNRDGYRQNG NGHHQPRPVH
601: SGMGNVNARS GRFNGPKQIA VTA

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.