Factsheet for HORVU2Hr1G042280.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G277000.1	Wheat	plastid	84.59	57.61
TraesCS2B01G295400.1	Wheat	plastid	83.99	57.08
TraesCS2A01G278000.1	Wheat	nucleus	83.69	56.42
OQU81322	Sorghum	cytosol, plastid	62.24	44.98
Os04t0372800-01	Rice	nucleus, plasma membrane	62.24	42.39
Zm00001d004070_P003	Maize	extracellular, plasma membrane	59.52	40.37
GSMUA_Achr6P12010_001	Banana	cytosol	38.67	35.16
GSMUA_Achr10P...	Banana	cytosol	39.88	35.01
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	40.18	34.73
Zm00001d025165_P001	Maize	plastid	59.21	33.11
GSMUA_Achr8P16490_001	Banana	cytosol	40.48	30.18
HORVU0Hr1G007150.3	Barley	cytosol	25.08	29.75
GSMUA_Achr11P...	Banana	cytosol	24.47	28.22
GSMUA_Achr9P01610_001	Banana	cytosol	33.23	28.21
GSMUA_Achr8P17500_001	Banana	cytosol	21.15	20.35
HORVU3Hr1G089630.1	Barley	cytosol	31.72	19.34
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	28.7	15.25
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	23.26	14.18
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	19.03	13.07

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	UniProt:A0A287HTW2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:HORVU2Hr1G042280	EnsemblPlants:HORVU2Hr1G042280.3
InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	PFAM:PF02136	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF30	SUPFAM:SSF54427	TMHMM:TMhelix	UniParc:UPI000B485E52	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:212177331..212181969

Molecular Weight (calculated)

35636.7 Da

IEP (calculated)

4.570

GRAVY (calculated)

-0.173

Length

331 amino acids

Sequence
(BLAST)

001: TAAGSPPAPA LASXAAAPGP TPPAQVVGNA FVQQYYNILH QSPELVFRFY QEASRIGRPA TTGADMDTVT TMEAINEKIM SMDIARAEIR GVDAQESLCG
101: GVTVLVTGHL TGKDDVCREF AQSFFLAPQE KGYFVLNDIL RYVGQGEADP SLPPPQQQLP APELDAVVAP AAALANGTVA PAETVPREQE ASPQPEPILS
201: ESVPRPNEED DPKEEVYNPP NEAEVPVVEE TPVPEVIDEV PNNVATSIPV SSPPVPHEEA PKKSYASIVK VMKAVLPPNS AVPYRPPPPH QNRRSKLLLL
301: LLLWLLMLQL SVLILRAATF KTQKLMRLRC M

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.