Factsheet for GSMUA_Achr9P01610_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	43.85	44.65
GSMUA_Achr10P...	Banana	cytosol	42.31	43.77
GSMUA_Achr8P17520_001	Banana	cytosol	18.21	43.56
GSMUA_Achr8P17510_001	Banana	cytosol	16.92	42.86
GSMUA_Achr6P12010_001	Banana	cytosol	38.97	41.76
GSMUA_Achr8P16490_001	Banana	cytosol	44.36	38.96
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	39.74	38.65
GSMUA_Achr11P...	Banana	cytosol	27.95	37.98
GSMUA_Achr4P00640_001	Banana	cytosol	34.87	35.14
GSMUA_Achr8P17500_001	Banana	cytosol	30.51	34.59
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	41.54	33.75
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	41.03	33.33
HORVU2Hr1G042280.3	Barley	plastid	28.21	33.23
EES06843	Sorghum	cytosol	40.77	33.06
Os04t0372800-01	Rice	nucleus, plasma membrane	41.03	32.92
Zm00001d004070_P003	Maize	extracellular, plasma membrane	41.03	32.79
TraesCS2D01G277000.1	Wheat	plastid	40.77	32.72
Zm00001d050610_P001	Maize	plasma membrane	40.0	32.7
TraesCS2B01G295400.1	Wheat	plastid	40.51	32.44
TraesCS2A01G278000.1	Wheat	nucleus	40.26	31.98
OQU81322	Sorghum	cytosol, plastid	36.15	30.79
Zm00001d025165_P001	Maize	plastid	41.28	27.2
GSMUA_Achr2P10150_001	Banana	cytosol	25.9	22.44
GSMUA_Achr4P30210_001	Banana	cytosol	25.64	22.27
GSMUA_Achr11P...	Banana	cytosol	26.15	21.61
GSMUA_Achr1P24520_001	Banana	nucleus	36.15	14.27

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr9G01610_001	EnsemblPlants:GSMUA_Achr9P01610_001	EnsemblPlants:GSMUA_Achr9T01610_001	InterPro:IPR000504	InterPro:IPR012677
InterPro:IPR018222	UniProt:M0TWL8	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF30
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0002952F78

Description

Putative G3BP-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G01610_001]

Coordinates

chr9:+:1249154..1253993

Molecular Weight (calculated)

43244.5 Da

IEP (calculated)

7.021

GRAVY (calculated)

-0.262

Length

390 amino acids

Sequence
(BLAST)

001: MEAQPSTPAE SLYYAQRVGE TFVNRYYHFL RNSPELVHRF YQESSRLGRA DDHGNVTSIT TIDAINEKIM SMDFCTLEIK AVHSQDSFGG GMMVLVTGFL
101: TRVDNVKRDF VQSFFLAPQE RGYYVLNDIL MHAGKVTPQL ENKGLTNGVS SPVVPEHGFF RQEENVSVPI VKASGVCNPR INGESWNLQE EEPGNGVVDE
201: VSDCFQAVGV KSKDTSVQQE MAKKTYASVV SKFSMSWWTQ VKAKKDRPWV SVVKTEQHPI SAPPASNGPT FSSSASRWQN IQMAECNTDG HSIYVKNLPL
301: DATHALLEEE FKRFGPIKAG GIQLKGNKLQ STCFGFVEFK LAGAVRCAIE ASPILIAGCP VYIEEKRIFG SGGKSDITLY THICICRLCS

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.