Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P17500_001 | Banana | cytosol | 62.58 | 29.65 |
| GSMUA_Achr11P... | Banana | cytosol | 33.13 | 18.82 |
| GSMUA_Achr6P12010_001 | Banana | cytosol | 41.72 | 18.68 |
| GSMUA_Achr9P01610_001 | Banana | cytosol | 43.56 | 18.21 |
| GSMUA_Achr3P02500_001 | Banana | cytosol, plastid | 42.33 | 18.02 |
| GSMUA_Achr10P... | Banana | cytosol | 39.88 | 17.24 |
| GSMUA_Achr8P16490_001 | Banana | cytosol | 44.17 | 16.22 |
| GSMUA_Achr4P00640_001 | Banana | cytosol | 37.42 | 15.76 |
| GSMUA_Achr8P00910_001 | Banana | cytosol, plastid | 37.42 | 15.21 |
| GSMUA_Achr4P30210_001 | Banana | cytosol | 28.22 | 10.24 |
| GSMUA_Achr2P10150_001 | Banana | cytosol | 28.22 | 10.22 |
| GSMUA_Achr11P... | Banana | cytosol | 27.61 | 9.53 |
| GSMUA_Achr1P24520_001 | Banana | nucleus | 37.42 | 6.17 |
| GSMUA_Achr8P17510_001 | Banana | cytosol | 1.84 | 1.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P17520_001 | EnsemblPlants:GSMUA_Achr8T17520_001 | EnsemblPlantsGene:GSMUA_Achr8G17520_001 | Gene3D:3.10.450.50 | InterPro:IPR018222 | InterPro:NTF2 |
| InterPro:NTF2-like_dom_sf | InterPro:Nuclear_transport_factor_2_euk | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF27 | PFAM:PF02136 | PFscan:PS50177 |
| SUPFAM:SSF54427 | UniParc:UPI0002951950 | UniProt:M0TRA5 | MapMan:16.9.1 | : | : |
Description
RNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr8G17520_001]
Coordinates
chr8:-:17510451..17511192
Molecular Weight (calculated)
18036.8 Da
IEP (calculated)
4.644
GRAVY (calculated)
-0.555
Length
163 amino acids
Sequence
(BLAST)
(BLAST)
001: MIHQFYKESS KLGRPDDHGN VTSVTTIATI NEMLLATSLG VPEITKVNSQ ESHHGGVLVH VTGRLTKEDN VKRDFSQSFF LAPQETGYFV LNDILQYVDE
101: IDEHQGSGEI DEQQRHQGSA NEQEETVSVP IDVVVAPAKE ICDSVSNDES SANRNRAKRS VTL
101: IDEHQGSGEI DEQQRHQGSA NEQEETVSVP IDVVVAPAKE ICDSVSNDES SANRNRAKRS VTL
001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.