Factsheet for GSMUA_Achr8P17510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 3
nucleus 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P17500_001	Banana	cytosol	43.51	19.48
GSMUA_Achr9P01610_001	Banana	cytosol	42.86	16.92
GSMUA_Achr10P...	Banana	cytosol	38.31	15.65
GSMUA_Achr8P00910_001	Banana	cytosol, plastid	39.61	15.21
GSMUA_Achr3P02500_001	Banana	cytosol, plastid	37.66	15.14
GSMUA_Achr6P12010_001	Banana	cytosol	35.06	14.84
GSMUA_Achr8P16490_001	Banana	cytosol	42.21	14.64
GSMUA_Achr4P00640_001	Banana	cytosol	36.36	14.47
GSMUA_Achr11P...	Banana	cytosol	26.62	14.29
GSMUA_Achr11P...	Banana	cytosol	27.27	8.9
GSMUA_Achr4P30210_001	Banana	cytosol	24.03	8.24
GSMUA_Achr2P10150_001	Banana	cytosol	24.03	8.22
GSMUA_Achr1P24520_001	Banana	nucleus	39.61	6.17
GSMUA_Achr8P17520_001	Banana	cytosol	1.95	1.84

Protein Annotations

EnsemblPlants:GSMUA_Achr8P17510_001	EnsemblPlants:GSMUA_Achr8T17510_001	EnsemblPlantsGene:GSMUA_Achr8G17510_001	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR10693	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00029685FC	UniProt:M0TRA4	MapMan:16.9.1	:	:

Description

nuclear transport factor 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G17510_001]

Coordinates

chr8:-:17508242..17509087

Molecular Weight (calculated)

16575.0 Da

IEP (calculated)

10.012

GRAVY (calculated)

-0.284

Length

154 amino acids

Sequence
(BLAST)

001: MPKRTYASVI KSAKDVPVNV ATAEWVPVVA APSKPVPAPT PEEPISSSVD ERSICVKNIP LQATPALLEE QFKRFGPIKP GGSQVRGHHK WQESHSCFGF
101: VEFQTSDSAR RAIEASPIVM SGRSVKIEPK KILNPGGKCG INSSSSSPLR LTCL

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.