Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42844 | Canola | cytosol | 75.75 | 73.71 |
| AT5G60980.3 | Thale cress | cytosol | 69.75 | 65.65 |
| CDY16827 | Canola | cytosol | 67.9 | 64.76 |
| CDY23092 | Canola | mitochondrion | 68.82 | 63.27 |
| CDY02179 | Canola | plastid | 70.21 | 60.32 |
| CDX87195 | Canola | plastid | 67.67 | 56.35 |
| KRH56802 | Soybean | cytosol, nucleus | 45.03 | 42.21 |
| KRH03143 | Soybean | cytosol, nucleus | 44.8 | 42.17 |
| GSMUA_Achr4P00640_001 | Banana | cytosol | 35.57 | 39.79 |
| TraesCS7B01G322100.1 | Wheat | cytosol | 14.32 | 38.99 |
| TraesCS7D01G414000.1 | Wheat | cytosol | 14.32 | 38.99 |
| TraesCS7A01G421800.1 | Wheat | cytosol | 14.32 | 38.75 |
| VIT_17s0000g05240.t01 | Wine grape | golgi, mitochondrion | 42.73 | 37.0 |
| CDX98124 | Canola | cytosol | 29.33 | 31.67 |
| CDY36405 | Canola | cytosol | 28.87 | 30.86 |
| CDX77365 | Canola | cytosol | 32.33 | 29.54 |
| CDY00813 | Canola | cytosol | 32.56 | 29.38 |
| KXG39124 | Sorghum | cytosol | 10.85 | 29.38 |
| CDY02983 | Canola | cytosol | 27.02 | 28.68 |
| CDY36616 | Canola | cytosol | 26.56 | 28.26 |
| CDY51206 | Canola | cytosol | 26.56 | 28.05 |
| HORVU0Hr1G007150.3 | Barley | cytosol | 18.01 | 27.96 |
| CDY50308 | Canola | cytosol | 26.33 | 27.27 |
| CDY54146 | Canola | cytosol | 27.48 | 27.11 |
| CDY07356 | Canola | cytosol | 24.71 | 27.09 |
| CDY40904 | Canola | nucleus | 26.56 | 26.68 |
| Os03t0418800-01 | Rice | mitochondrion | 31.87 | 26.39 |
| CDY04270 | Canola | cytosol | 24.94 | 25.9 |
| CDY04271 | Canola | cytosol | 24.94 | 25.12 |
| Zm00001d047289_P003 | Maize | plasma membrane | 33.72 | 25.0 |
| CDY13135 | Canola | mitochondrion | 26.56 | 24.89 |
| TraesCS3D01G392700.1 | Wheat | cytosol, nucleus, plastid | 30.95 | 24.59 |
| CDX85353 | Canola | cytosol | 26.33 | 24.57 |
| TraesCS3B01G431000.2 | Wheat | cytosol | 30.95 | 24.5 |
| TraesCS3A01G398600.1 | Wheat | cytosol | 30.95 | 24.45 |
| CDY36961 | Canola | cytosol | 26.56 | 24.42 |
| CDX95953 | Canola | cytosol | 26.33 | 24.36 |
| CDX86290 | Canola | cytosol | 27.48 | 24.29 |
| CDX94739 | Canola | cytosol | 22.86 | 24.15 |
| HORVU3Hr1G089630.1 | Barley | cytosol | 30.02 | 23.94 |
| CDY22322 | Canola | cytosol | 22.17 | 23.53 |
| Os07t0603100-01 | Rice | extracellular | 30.25 | 23.02 |
| EER94684 | Sorghum | cytosol | 32.79 | 22.9 |
| CDY07355 | Canola | cytosol | 26.56 | 21.99 |
| Zm00001d022071_P002 | Maize | cytosol | 27.48 | 20.31 |
| HORVU2Hr1G032730.1 | Barley | cytosol, nucleus, peroxisome | 29.1 | 20.22 |
| TraesCS2B01G202200.1 | Wheat | cytosol | 28.87 | 19.94 |
| TraesCS2D01G183500.1 | Wheat | cytosol | 28.87 | 19.84 |
| TraesCS2A01G176100.1 | Wheat | cytosol, nucleus, plastid | 28.64 | 19.68 |
| GSMUA_Achr1P24520_001 | Banana | nucleus | 37.88 | 16.6 |
| OQU90215 | Sorghum | cytosol | 28.64 | 16.02 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | GO:A0A078IAY5 | UniProt:A0A078IAY5 | EnsemblPlants:CDY47006 |
| ProteinID:CDY47006 | ProteinID:CDY47006.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| EnsemblPlantsGene:GSBRNA2T00086515001 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf |
| InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF02136 | PFscan:PS50102 | PFscan:PS50177 |
| PANTHER:PTHR10693 | PANTHER:PTHR10693:SF27 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54427 |
| SUPFAM:SSF54928 | UniParc:UPI0004EE5F69 | SEG:seg | : | : | : |
Description
BnaC02g41910DBnaC02g41910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IAY5]
Coordinates
chrLK032694:+:50819..53253
Molecular Weight (calculated)
47452.3 Da
IEP (calculated)
4.460
GRAVY (calculated)
-0.378
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHQEASTSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSLLTRPDVT GSVTTVTTMQ AINEKIMSLK YEDYTAEIET ADAQESYERG VIVLVTGCLT
101: GSDNVGKRFS QTFFLAPQDK GYFVLNDVFR FLEEKDVTAH NGTTRDVQAP VEPERVVVSH EAEVEPEPPI QPPAQLSHSE VRSVPQGDAP KHSYASILKL
201: MNSSPALTRV ARNKPRPAQV STNQRPTATP PAVTEASGVE NVPNSSNVDV EDAGHSIYVR NLPFDTTPTQ LEEVFKSFGA IKHEGIQIRS NKQQGFCFGF
301: VEFETSSGKQ SALEASPVTI GDRQVVLEEK KPNRGNSGGG GVGEGTLEEE EVSGMKVSKE DVVEEEEAME EVSIPVDLKA QTHGVEEKDT KEEVEEVEDV
401: ASLAVVLHLD FAFSSASMRV VLSLFFFAFP LEF
101: GSDNVGKRFS QTFFLAPQDK GYFVLNDVFR FLEEKDVTAH NGTTRDVQAP VEPERVVVSH EAEVEPEPPI QPPAQLSHSE VRSVPQGDAP KHSYASILKL
201: MNSSPALTRV ARNKPRPAQV STNQRPTATP PAVTEASGVE NVPNSSNVDV EDAGHSIYVR NLPFDTTPTQ LEEVFKSFGA IKHEGIQIRS NKQQGFCFGF
301: VEFETSSGKQ SALEASPVTI GDRQVVLEEK KPNRGNSGGG GVGEGTLEEE EVSGMKVSKE DVVEEEEAME EVSIPVDLKA QTHGVEEKDT KEEVEEVEDV
401: ASLAVVLHLD FAFSSASMRV VLSLFFFAFP LEF
001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA
Arabidopsis Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.