CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07356	Canola	cytosol	82.73	87.34
CDY04271	Canola	cytosol	83.45	80.93
CDY07355	Canola	cytosol	82.25	65.58
CDY40904	Canola	nucleus	61.87	59.86
CDX95953	Canola	cytosol	63.55	56.62
CDY50308	Canola	cytosol	56.35	56.22
CDY54146	Canola	cytosol	57.31	54.44
AT1G69250.1	Thale cress	cytosol	50.84	49.65
CDX98124	Canola	cytosol	30.94	32.17
CDY36405	Canola	cytosol	29.74	30.62
CDY02983	Canola	cytosol	29.26	29.9
CDY36616	Canola	cytosol	29.02	29.73
CDY51206	Canola	cytosol	29.02	29.51
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	28.3	28.64
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	29.5	26.45
CDY42844	Canola	cytosol	27.82	26.07
CDY16827	Canola	cytosol	28.06	25.77
CDY47006	Canola	cytosol	25.9	24.94
CDY23092	Canola	mitochondrion	28.06	24.84
CDY00813	Canola	cytosol	26.86	23.33
CDY02179	Canola	plastid	28.06	23.21
CDX77365	Canola	cytosol	26.38	23.21
CDX87195	Canola	plastid	27.58	22.12
Solyc05g012240.1.1	Tomato	cytosol	20.86	21.17
CDX85353	Canola	cytosol	22.78	20.47
CDX86290	Canola	cytosol	23.74	20.2
CDY13135	Canola	mitochondrion	20.62	18.61
CDY36961	Canola	cytosol	19.9	17.62
CDX94739	Canola	cytosol	16.79	17.07
CDY22322	Canola	cytosol	16.55	16.91
PGSC0003DMT400072921	Potato	cytosol	19.9	13.13
Solyc05g012230.2.1	Tomato	extracellular	6.24	6.33

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078EQN9	EnsemblPlants:CDY04270	ProteinID:CDY04270
ProteinID:CDY04270.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00118019001
InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI0004EEC511	SEG:seg	:	:	:	:

Description

BnaC06g25450D

Coordinates

chrLK031950:+:829325..830992

Molecular Weight (calculated)

44946.3 Da

IEP (calculated)

10.171

GRAVY (calculated)

-0.471

Length

417 amino acids

Sequence
(BLAST)

001: MAAEGGVHCA RQVSEAFVEK YYHLVGTTTH AAHKFYGSDS LVTRPGPDGT IMSFPSLEAI KKHYLSSYYD GTTFDVVSVD TQSSVGDGIF IMVIGFLTGK
101: DNLKRKFSQG FYLARQNRNY VVSNDIHRFV DEEGSTPRAL PAAVFGTFAK SCPQVTKPVE EMKKTGQVHK ATKKKSVNAA EVKKVVAPEN AVVTAQKPKE
201: PVAETAATPP LDGAKKSYAS MVLSMSRNAA PLQVKAAPVQ KPSTVAQPKP HVAPPPVQKS DQKMVDEPGT SIFVSNLPMD ARPLQVYELF KGFGALKGNG
301: VQIRSSRASG SCFAFVAFES VASVQSVLKA AKSNQFNLGE HRLRVKEKQV EYNSSKPSGG RSEGESMSQS GSVDGSKTQS GSVDGNKTVN VSVGGEEDDG
401: FKVVRSRRNR SGKRRQE

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.