CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02179	Canola	plastid	93.21	87.1
AT5G60980.3	Thale cress	cytosol	84.29	86.3
CDY42844	Canola	cytosol	78.77	83.37
CDY16827	Canola	cytosol	79.83	82.82
CDX87195	Canola	plastid	81.53	73.85
CDY47006	Canola	cytosol	63.27	68.82
KRH56802	Soybean	cytosol, nucleus	48.83	49.78
KRH03143	Soybean	cytosol, nucleus	48.62	49.78
VIT_17s0000g05240.t01	Wine grape	golgi, mitochondrion	49.68	46.8
GSMUA_Achr4P00640_001	Banana	cytosol	34.61	42.12
TraesCS7D01G414000.1	Wheat	cytosol	13.38	39.62
TraesCS7B01G322100.1	Wheat	cytosol	13.38	39.62
TraesCS7A01G421800.1	Wheat	cytosol	12.95	38.12
CDX77365	Canola	cytosol	35.46	35.23
CDX98124	Canola	cytosol	29.94	35.16
CDY00813	Canola	cytosol	35.67	35.0
CDY36405	Canola	cytosol	29.72	34.57
CDY50308	Canola	cytosol	28.03	31.58
CDY02983	Canola	cytosol	27.18	31.37
CDY54146	Canola	cytosol	28.87	30.98
CDY51206	Canola	cytosol	26.75	30.73
CDY36616	Canola	cytosol	26.54	30.71
Os03t0418800-01	Rice	mitochondrion	33.76	30.4
CDX85353	Canola	cytosol	29.94	30.39
CDX86290	Canola	cytosol	30.57	29.39
TraesCS3D01G392700.1	Wheat	cytosol, nucleus, plastid	33.76	29.17
TraesCS3B01G431000.2	Wheat	cytosol	33.76	29.07
HORVU0Hr1G007150.3	Barley	cytosol	17.2	29.03
CDX94739	Canola	cytosol	25.27	29.02
CDY22322	Canola	cytosol	25.05	28.92
Os07t0603100-01	Rice	extracellular	34.82	28.82
CDY13135	Canola	mitochondrion	28.24	28.79
KXG39124	Sorghum	cytosol	9.77	28.75
TraesCS3A01G398600.1	Wheat	cytosol	33.33	28.65
CDY07356	Canola	cytosol	23.99	28.61
HORVU3Hr1G089630.1	Barley	cytosol	32.7	28.36
CDY36961	Canola	cytosol	28.24	28.24
CDY04270	Canola	cytosol	24.84	28.06
CDY40904	Canola	nucleus	25.48	27.84
Zm00001d047289_P003	Maize	plasma membrane	34.39	27.74
CDY04271	Canola	cytosol	24.63	26.98
EER94684	Sorghum	cytosol	33.55	25.48
CDX95953	Canola	cytosol	25.27	25.43
TraesCS2B01G202200.1	Wheat	cytosol	31.85	23.92
HORVU2Hr1G032730.1	Barley	cytosol, nucleus, peroxisome	31.63	23.92
Zm00001d022071_P002	Maize	cytosol	29.72	23.89
TraesCS2D01G183500.1	Wheat	cytosol	31.85	23.81
TraesCS2A01G176100.1	Wheat	cytosol, nucleus, plastid	31.42	23.49
CDY07355	Canola	cytosol	25.27	22.75
GSMUA_Achr1P24520_001	Banana	nucleus	42.46	20.24
OQU90215	Sorghum	cytosol	31.42	19.12

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078GDJ7	UniProt:A0A078GDJ7	EnsemblPlants:CDY23092
ProteinID:CDY23092	ProteinID:CDY23092.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00021569001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF27	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EE885D	SEG:seg	:	:	:

Description

BnaC07g30950DBnaC07g30950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDJ7]

Coordinates

chrLK032139:-:561942..565228

Molecular Weight (calculated)

50628.7 Da

IEP (calculated)

6.001

GRAVY (calculated)

-0.612

Length

471 amino acids

Sequence
(BLAST)

001: MIVHRSQSSF SFCSRSLFIT MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSLLTRPDAT GAVTTVTTML AINDKILSLK YEEYTAEIET
101: ADAQESHERG VIVLVTGRLT GNDNVRKKFS QTFFLAPQDK GYFVLNDVFR FLEENKVTTQ AINGTTTRDV HTPVEPERVV VSREAEVEPE PVATIEEEED
201: LDSVAEVYDP SDKDEGVVVD AEPIEPPAQI SHSEVPSLPQ GDAPKHSYAS ILKLMKSGPA PTTQVARSKP RAAAPVVTKP KPAAPPAEPA AAAPENVPNS
301: SNVDVEDDGH SIYVRNLTFD TTPTQLEEVF KSFGAIKHEG IQVRSNKQQG FCFGFVEFET ASGKQSALEA SPVTIGDRQA VLEEKKTNSR GGGNNGGGRG
401: RYFGGRGGFR NESFKGGRGG GGGRGGYGRG EYSGRPRSSN PRNNGEGYQR VPQNGGSGRG GHGGPRGGAS S

Best Arabidopsis Sequence Match ( AT5G60980.2 )
(BLAST)

001: MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT
101: GNDNVRKKFS QSFFLAPQDK GYFVLNDVFR FLEEKEVTAQ ARSVPINGTT RDVQAPIEPE RVVVSHEPEV EPEPVASIEE EDLDNVAEVY DPSDKDEGVV
201: VDVEPIEPPT QISHNEILSV PQGDAPKHSY ASILKQMKSS PAPTTHVARN KPRPAPVNQK LTAPPAEPAA RPEASAHENV PNSSHVDVED DGHSIYVRNL
301: PFDSTPTQLE EVFKNFGAIK HEGIQVRSNK QQGFCFGFVE FETSSGKQSA LEASPVTIGD RQAVVEEKKT NSRGGGNNGG SRGRYFSGRG SFRNESFKGG
401: RGGGGRGGYG RGGGEFSGRP KSSNPRNGGE GYQRVPQNGG GGRGGRGEGG RGGARGGGSS

Arabidopsis Description

AT5g60980/MSL3_100 [Source:UniProtKB/TrEMBL;Acc:Q9FME2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.