CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY54146	Canola	cytosol	93.3	88.84
Bra038318.1-P	Field mustard	cytosol	96.65	79.06
CDY40904	Canola	nucleus	60.77	58.93
AT1G69250.1	Thale cress	cytosol	58.37	57.14
CDY04270	Canola	cytosol	56.22	56.35
CDY04271	Canola	cytosol	56.7	55.12
CDY07356	Canola	cytosol	50.72	53.67
CDX95953	Canola	cytosol	59.57	53.21
CDY07355	Canola	cytosol	57.18	45.7
CDX98124	Canola	cytosol	33.25	34.66
CDY36405	Canola	cytosol	33.25	34.32
CDY02983	Canola	cytosol	32.3	33.09
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	32.3	32.77
CDY36616	Canola	cytosol	31.82	32.68
CDY51206	Canola	cytosol	31.82	32.44
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	33.25	29.89
CDY16827	Canola	cytosol	31.34	28.85
CDY42844	Canola	cytosol	30.38	28.54
CDY23092	Canola	mitochondrion	31.58	28.03
CDY47006	Canola	cytosol	27.27	26.33
CDY02179	Canola	plastid	31.58	26.19
CDX77365	Canola	cytosol	28.71	25.32
CDY00813	Canola	cytosol	28.71	25.0
CDX87195	Canola	plastid	30.38	24.42
Solyc05g012240.1.1	Tomato	cytosol	22.01	22.38
CDX85353	Canola	cytosol	24.64	22.2
CDX86290	Canola	cytosol	25.6	21.84
CDY13135	Canola	mitochondrion	21.53	19.48
CDX94739	Canola	cytosol	18.9	19.27
CDY36961	Canola	cytosol	21.05	18.68
CDY22322	Canola	cytosol	17.7	18.14
PGSC0003DMT400072921	Potato	cytosol	21.53	14.24
Solyc05g012230.2.1	Tomato	extracellular	6.46	6.57

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:A0A078IMQ7	UniProt:A0A078IMQ7	EnsemblPlants:CDY50308
ProteinID:CDY50308	ProteinID:CDY50308.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00096394001	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf
InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF41	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0004EE5A19	SEG:seg	:	:	:

Description

BnaA02g14660DBnaA02g14660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMQ7]

Coordinates

chrLK032898:+:69986..72438

Molecular Weight (calculated)

44993.7 Da

IEP (calculated)

5.931

GRAVY (calculated)

-0.459

Length

418 amino acids

Sequence
(BLAST)

001: MATEEGVHEA HQVSEAFVEQ YYHIVGKVSQ EAHKLYVAAS VVSRPGPDGT MTSFTSLEAI DKHFLSCDSS TFEVLSVDSQ SSLEEGIFIM VIGFLTGEDN
101: LKRKFSQMFY LARQNTAYVV VNDIFRYVDE VSSTPTTLPA VVESVPETEV VEPVHAPAEN SVNADVSEVK KAVAEAATPL DNGSDKHSVE KAVTAQKPKE
201: IVADTAAPPV DGGKKSFAAM VASMARSSAP FQVKASPVVQ KPKYMAAPKP REAAPAPKAP AAVSKRERKN DQRIVDEPGT SIFVSNLPMD AMPPQLYELF
301: KEFGPIKEHG VQVRSSNARG TCFGFVAFET VTSVQSVLEA AKNNAFKLGD LEYDGSKPSG GKRTENGSAA DGSKTENGSA ADAEDDFKPI RSRRNRSEKK
401: GNGNNEKNSV QTTPKPKA

Best Arabidopsis Sequence Match ( AT1G69250.1 )
(BLAST)

001: MATEGVVPSA QDIAAEFVRQ YYHVLGQLPH EARRLYVDAS VVSRPDVTGT MMSFTSVEAI NKHILSCDFE NTKFEVLSVD SQNSLEDGIF IMVIGFMTGK
101: DNQRRKFSQM FYLARQNTLV VLNDMLRYVD QEDSSTTETP CEPVTEIVRP ADGLKKAEKT ELKQKNVASV EKSVNAAVEK NAAPLDNGKM KQSEKAVITQ
201: KVTEPDAAPQ PDGAKRSFAD IVGSMAKNAA PFQVKSPVQA PVQKPKYVGQ PRAAAAPQKP AYVSKSIKKN DQKVIEVPGT SIFVANLPLN AMPPQLFELF
301: KDFGPIKENG IQVRSSRGNA NPVCFGFISF ETVASVQSVL QAAKNTPFML ADRKLRVKEK EVDYDGSKPS GKTKGGSNKT QNGSADSSKT ENGSADDSKT
401: NGSAEDGEKE FKQVKSRRNR KKSEAAH

Arabidopsis Description

At1g69250 [Source:UniProtKB/TrEMBL;Acc:Q9LDI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.