Factsheet for PGSC0003DMT400003781

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g090940.2.1	Tomato	nucleus	97.65	97.86
VIT_05s0049g01940.t01	Wine grape	cytosol	63.54	62.74
KRH33563	Soybean	cytosol	59.49	59.24
KRG90305	Soybean	cytosol	59.7	59.07
KRG92252	Soybean	cytosol	53.73	53.62
GSMUA_Achr4P30210_001	Banana	cytosol	45.84	47.88
GSMUA_Achr2P10150_001	Banana	cytosol	45.63	47.56
PGSC0003DMT400051923	Potato	cytosol	43.92	44.49
GSMUA_Achr11P...	Banana	cytosol	44.35	44.07
Zm00001d021999_P002	Maize	plasma membrane	40.51	43.38
KXG36602	Sorghum	cytosol	40.51	43.28
Os02t0131700-00	Rice	plastid	40.51	42.41
TraesCS7B01G179500.1	Wheat	nucleus	39.02	42.07
TraesCS7A01G281900.1	Wheat	nucleus	38.59	41.61
TraesCS7D01G280400.2	Wheat	cytosol	35.39	37.73
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	38.59	33.33
PGSC0003DMT400053195	Potato	cytosol	17.27	31.64
PGSC0003DMT400051956	Potato	cytosol	30.28	29.77
PGSC0003DMT400071822	Potato	cytosol, plastid	27.72	27.08
PGSC0003DMT400003713	Potato	cytosol	23.45	22.27
PGSC0003DMT400072921	Potato	cytosol	20.26	15.03
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	2.13	1.83

Protein Annotations

EntrezGene:102582243	MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	UniProt:M0ZMB2
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
EnsemblPlantsGene:PGSC0003DMG400001496	PGSC:PGSC0003DMG400001496	EnsemblPlants:PGSC0003DMT400003781	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF31	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928
UniParc:UPI000295D42F	RefSeq:XP_006340888.1	SEG:seg	:	:	:

Description

Ras-GTPase-activating protein-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001496]

Coordinates

chr9:-:57346170..57352835

Molecular Weight (calculated)

52484.2 Da

IEP (calculated)

5.612

GRAVY (calculated)

-0.597

Length

469 amino acids

Sequence
(BLAST)

001: MATPFHLPVT AAQVGTYFVG QYYQMLQTQP DFVHQFYSDA STVLRIDSST RETASGMLQI HTLVMSLQYT GIEIKTLHSL ESWNGGVLVM VSGSVNVKGI
101: NRSRKFVQSF FLAPQEKGYF VLNDIFHYVD EEQILQQPLA YLAHTNLDSK LNASHALQEQ VPNYMFGGEI QAREFADAPK IEDNGPVNNY SFPEERLQHV
201: PEAENILEDN FAVQSNGPLQ STINAVQDHL SCPVEEPVAE PQKHTYASIL QVTKGNSAQG GLAQSSLNKL TPPPSEWQHV PEPPALPSVH STNTIERYTE
301: ATDEASAVED EVEVKSVYVK NVPTTMAAYE IEEEFKKFGK LKPDAVAIRT RKDIDVCYAF VEFEDVTGVQ NAIEASTVQI GGHQLYIEGR RPNRNNLIRG
401: RGRGRGRVSY SMDGRGRYGG RGFGRGGQDG GDRDYGRSRG NGYYRQAPRQ ERAYPSNQQS LRNEQYSWE

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.