Factsheet for Os02t0131700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G281900.1	Wheat	nucleus	81.7	84.14
KXG36602	Sorghum	cytosol	82.37	84.05
Zm00001d021999_P002	Maize	plasma membrane	81.92	83.79
TraesCS7B01G179500.1	Wheat	nucleus	81.25	83.68
TraesCS7D01G280400.2	Wheat	cytosol	74.55	75.91
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	80.8	66.67
GSMUA_Achr2P10150_001	Banana	cytosol	48.66	48.44
GSMUA_Achr4P30210_001	Banana	cytosol	47.54	47.44
GSMUA_Achr11P...	Banana	cytosol	48.44	45.97
VIT_05s0049g01940.t01	Wine grape	cytosol	45.76	43.16
KRH33563	Soybean	cytosol	45.31	43.1
KRG90305	Soybean	cytosol	44.64	42.19
KRG92252	Soybean	cytosol	43.75	41.7
PGSC0003DMT400003781	Potato	cytosol	42.41	40.51
Solyc09g090940.2.1	Tomato	nucleus	41.96	40.17
Os04t0510500-01	Rice	cytosol	35.49	34.42
Os04t0372800-01	Rice	nucleus, plasma membrane	32.14	29.63
Os02t0497700-01	Rice	cytosol, nucleus, plasma membrane	30.8	28.75
Os03t0418800-01	Rice	mitochondrion	25.22	21.61
Os07t0603100-01	Rice	extracellular	23.21	18.28
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	3.79	3.12

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:4328199	UniProt:A0A0P0VEB3	ProteinID:BAS76822.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0030001	GO:GO:0046873	InterPro:IPR000504
InterPro:IPR012677	InterPro:IPR018222	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf
EnsemblPlantsGene:Os02g0131700	EnsemblPlants:Os02t0131700-00	PFAM:PF00076	PFAM:PF02136	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI0001C7D87F	RefSeq:XP_015625416.1	SEG:seg	:	:

Description

Similar to RNA binding protein. (Os02t0131700-00)

Coordinates

chr2:-:1652110..1655309

Molecular Weight (calculated)

49264.1 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.576

Length

448 amino acids

Sequence
(BLAST)

001: MASAAAAAAT QVGTYFLRNY YNLLQQSPDV VHQFYNDAST MVRVDDLAGT NTTASTMMDI HSLIMSLNFT QIEIKTANFL NSWGDGVLVM VSGLVQTKEY
101: SHQRKFIQMF FLAPQEKGYF VLNDYFHFVD EEQVQPAPVI AQDNFETNMA SNSVVEPEYI HEEENQSAVP ITSEESDAVE NYTYSEPPQQ VVSQSDNWGD
201: EPLPEEPISS FTNGMAMAPE EPVQSPPVPP PHVEEPVGEP VKKTYASILR TAKAPLVFPV AQPAPTRPHQ ATETNQAAQH SVMTSSVATE KPKTDVYGEF
301: AVQDDEESKS VYVGNVPSSV SEADLENEFK KFGRLIPDGV AIRSRKETGG YYAFVEFEEL SGVHNALKAS PIEINGRQIY VEERKPNSGI RGGRRGGRGR
401: FGGGGRGYAR GGGDNEYAGN RGSGRPSNGY QRVPHHERGI LGSHNARN

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.