CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021999_P002	Maize	plasma membrane	93.39	93.61
Os02t0131700-00	Rice	plastid	84.05	82.37
TraesCS7A01G281900.1	Wheat	nucleus	80.18	80.92
TraesCS7B01G179500.1	Wheat	nucleus	79.04	79.77
TraesCS7D01G280400.2	Wheat	cytosol	72.89	72.73
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	79.5	64.27
GSMUA_Achr2P10150_001	Banana	cytosol	46.01	44.89
GSMUA_Achr4P30210_001	Banana	cytosol	45.79	44.77
GSMUA_Achr11P...	Banana	cytosol	47.38	44.07
VIT_05s0049g01940.t01	Wine grape	cytosol	46.24	42.74
KRH33563	Soybean	cytosol	45.79	42.68
KRG90305	Soybean	cytosol	45.33	41.98
PGSC0003DMT400003781	Potato	cytosol	43.28	40.51
KRG92252	Soybean	cytosol	43.28	40.43
Solyc09g090940.2.1	Tomato	nucleus	43.05	40.38
EES11106	Sorghum	cytosol	34.4	34.09
EES06843	Sorghum	cytosol	31.66	28.9
OQU81322	Sorghum	cytosol, plastid	23.01	22.05
KXG39124	Sorghum	cytosol	7.74	21.25
EER94684	Sorghum	cytosol	25.51	18.06
OQU90215	Sorghum	cytosol	22.1	12.53
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	3.19	2.57

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	UniProt:A0A1B6QFA5	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0008150	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KXG36602	ProteinID:KXG36602
ProteinID:KXG36602.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF29	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	EnsemblPlantsGene:SORBI_3002G359900	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI0001C80E30
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:72223032..72227228

Molecular Weight (calculated)

48409.1 Da

IEP (calculated)

4.888

GRAVY (calculated)

-0.625

Length

439 amino acids

Sequence
(BLAST)

001: MASAAATQVG TYFLRNYYNL LQQTPDVVHQ FYSDASTMVR VDDLTGTTAA ANNMMDIHSL IMSLNFTQIE IKTANFVNSW GDGVLVMVSG LVQTKEYSHQ
101: RKFIQMFFLA PQEKGYFVLN DYFHFVDQEH VQPAPVIGQE DYESNLAPNT VVETAPEYIH EEETQQIAPE GHDLVDNYTY SEPQQQVVSS DNWGEEPLPE
201: EPPSFSNEMT VAPEEPVQPP PVPPPHVEEP VGEPVKKTYA SILKTAKAPP AFPVAQQVPV SKPSHPTTES IQTQHSVMAS STGAEKPRSD VYGEGAAHDD
301: EESKSVYVGN VPANVNEADL ESEFKKFGRL IPDGVAIRSR KETGGYYAFV EFEELSGVHN ALKASPIEIN GRQIYVEERK PNSGIRGGRR GGRGRFSGGG
401: RGYARGGGDE YNGNRSRSNG YGRVPHQERG ILGSHTARN

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.