CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90305	Soybean	cytosol	94.27	93.67
KRG92252	Soybean	cytosol	76.43	76.6
VIT_05s0049g01940.t01	Wine grape	cytosol	69.21	68.63
Solyc09g090940.2.1	Tomato	nucleus	59.24	59.62
PGSC0003DMT400003781	Potato	cytosol	59.24	59.49
GSMUA_Achr2P10150_001	Banana	cytosol	50.32	52.67
GSMUA_Achr4P30210_001	Banana	cytosol	49.47	51.89
KRH67452	Soybean	cytosol	48.83	50.88
KRG95733	Soybean	cytosol	47.35	49.56
GSMUA_Achr11P...	Banana	cytosol	47.35	47.25
Zm00001d021999_P002	Maize	plasma membrane	42.89	46.12
KXG36602	Sorghum	cytosol	42.68	45.79
Os02t0131700-00	Rice	plastid	43.1	45.31
TraesCS7A01G281900.1	Wheat	nucleus	40.76	44.14
TraesCS7B01G179500.1	Wheat	nucleus	40.34	43.68
TraesCS7D01G280400.2	Wheat	cytosol	37.37	40.0
HORVU7Hr1G061850.1	Barley	cytosol, mitochondrion, nucleus	41.19	35.73
KRG99633	Soybean	cytosol	31.63	31.3
KRH46640	Soybean	cytosol	30.36	30.95
KRH03143	Soybean	cytosol, nucleus	29.94	30.65
KRH56802	Soybean	cytosol, nucleus	29.72	30.3
KRH45051	Soybean	cytosol	28.87	29.44
KRH50515	Soybean	cytosol, endoplasmic reticulum, nucleus	24.42	27.91
KRH01288	Soybean	cytosol	28.03	27.73
KRG89479	Soybean	cytosol, endoplasmic reticulum, nucleus	25.27	25.59
KRH57274	Soybean	cytosol, mitochondrion	11.04	24.19
Os02t0131800-01	Rice	cytosol, peroxisome, plasma membrane	2.34	2.02

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EMBL:ACUP02006526	EnsemblPlantsGene:GLYMA_10G131700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0008150	GO:GO:0030529
UniProt:I1LAP5	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	EnsemblPlants:KRH33563	ProteinID:KRH33563
ProteinID:KRH33563.1	InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF02136	PFscan:PS50102	PFscan:PS50177	PANTHER:PTHR10693	PANTHER:PTHR10693:SF31	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427	SUPFAM:SSF54928	UniParc:UPI000233C4DC	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:35526793..35531590

Molecular Weight (calculated)

52346.6 Da

IEP (calculated)

6.252

GRAVY (calculated)

-0.718

Length

471 amino acids

Sequence
(BLAST)

001: MATPFPIPVT AAQVGTYFVG QYYQVLQSQP EFVHQFYSDA STMLRIDGNA RETAAAMLQI HALIMSLSYT GIEIKTAQSL ESWSGGVLVM VSGSVQVKDY
101: SRRRKFMQTF FLAPQEKGFF VLNDIFHFVE EDPVHQQQAV LLPQSNLDPK LNASSAINKP VSNYLLGRDI QARDYVATNE VKENGVVDNY GFSEQRMQRA
201: PDSEHIREDN AVEESNGSLQ SSVNAVQDHA PASPDEPAGE PQKHTYASIL RVAKGQSTPS VASQHKNVSP SEWDHAPQSS SQQQQMTASA NAFERSETDA
301: AEEFPATEDE DEIKSVYVRN LSPTVSPSEI EDEFKNFGRI RPDGVVIRSR KDVGVCYAFV EFEDMTGVYN AVKAGSVQIA GRQVYIEERR PNSNIPSRGG
401: RRGRGRGSYQ SDAPRGRFNP RNFGRGHGQD GSDREYNKLK GNGFYRPSPR QERGNSGHHQ VPRNGQNLAE S

Best Arabidopsis Sequence Match ( AT3G25150.1 )
(BLAST)

001: MAMLGAQQVP AAACTPDMVG NAFVPQYYHI LHQSPEHVHR FYQEISKLGR PEENGLMSIT STLQAIDKKI MALGYGVISA EIATVDTQES HGGGYIVLVT
101: GYLTGKDSVR RTFSQTFFLA PQETGYFVLN DMFRFIDEGT VVHGNQIPVN NVQAPVNTYQ DTAAAKEIPD DFVQEKYVQE NHAVKQTEVL SKSINEPEKV
201: FTPSEDEQVS AAEEALVTET VNEAPIEVQK VGESDSRTGE IPKRSYASIV KVMKENAAPM SASRTPTKVE PKKQEDQAIH IPLPTPLSEK SDSGANVAVN
301: ENNQENERAL GPSIYLKGLP LDATPALLEN EFQKFGLIRT NGIQVRSQKG FCFGFVEFES ASSMQSAIEA SPVMLNGHKV VVEEKRSTAR GNYRGRSTFG
401: VNTGYRNEGG RGRGSFGGGR GGYGRTDFNG YGNNRGNNRG GYANRANGDG GGFPRANGNN GRVRRGGGND ANRATKPVDD APRVSVAA

Arabidopsis Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J8X6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.