Factsheet for AT5G48650.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85353	Canola	cytosol	63.32	62.5
CDX86290	Canola	cytosol	63.1	58.98
Bra037472.1-P	Field mustard	cytosol	62.23	58.16
Solyc09g059310.2.1	Tomato	extracellular, nucleus	37.77	36.5
KRH46640	Soybean	cytosol	36.03	35.71
PGSC0003DMT400053195	Potato	cytosol	19.43	34.77
Solyc06g007780.2.1	Tomato	cytosol	35.81	34.31
KRG99633	Soybean	cytosol	35.37	34.03
PGSC0003DMT400051956	Potato	cytosol	35.15	33.75
Solyc06g083300.2.1	Tomato	nucleus	34.72	33.4
VIT_00s0216g00030.t01	Wine grape	cytosol	36.24	31.44
PGSC0003DMT400071822	Potato	cytosol, plastid	32.31	30.83
AT5G60980.3	Thale cress	cytosol	30.35	30.22
AT3G25150.2	Thale cress	plastid	37.99	29.64
VIT_00s2623g00010.t01	Wine grape	cytosol	17.25	28.32
AT5G43960.1	Thale cress	cytosol	27.07	27.56
AT1G13730.1	Thale cress	cytosol	25.11	26.87
AT2G03640.4	Thale cress	nucleus	24.67	24.94
AT1G69250.1	Thale cress	cytosol	20.09	21.55
AT3G55540.1	Thale cress	cytosol	13.1	17.96
AT3G07250.1	Thale cress	nucleus	25.33	17.13

Protein Annotations

MapMan:16.9.1	Gene3D:3.10.450.50	Gene3D:3.30.70.330	EntrezGene:834922	ProteinID:AED95702.1	ArrayExpress:AT5G48650
EnsemblPlantsGene:AT5G48650	RefSeq:AT5G48650	TAIR:AT5G48650	RefSeq:AT5G48650-TAIR-G	EnsemblPlants:AT5G48650.1	TAIR:AT5G48650.1
Unigene:At.29836	EMBL:BT002864	EMBL:BT005640	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0030529	InterPro:IPR000504	InterPro:IPR012677	InterPro:IPR018222	RefSeq:NP_199676.2
InterPro:NTF2	InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF02136
PO:PO:0000037	PO:PO:0000084	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009052	PO:PO:0020094	PO:PO:0020100	PO:PO:0025022	PFscan:PS50102	PFscan:PS50177
PANTHER:PTHR10693	UniProt:Q84JH2	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54427
SUPFAM:SSF54928	UniParc:UPI000000BE06	SEG:seg	:	:	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q84JH2]

Coordinates

chr5:+:19726672..19729764

Molecular Weight (calculated)

50077.2 Da

IEP (calculated)

5.048

GRAVY (calculated)

-0.565

Length

458 amino acids

Sequence
(BLAST)

001: MDSTAATKRV VDPLTVGSAF VNQYYYIFCN MPEHLPRFYQ EISRVGRVGQ DGVMRDFSTF QGISEELKRL TYGDCNSAEI TSYDTQESHN GGFLLFVTGY
101: FTLNERSRRK FTQTFFLAPQ EKGFFVLNDI LRFVNDDAKD NVPETIDGEV VSGINSTTPT IINGMKGSEQ AACVSVNPVC KEVSKPLDNE NAKDNVLVPE
201: IANEVARTEI TCKEVADDSQ KNYDPDDGLA DAPKKSYASV LKVTKDKFGV PAVSLPSPKK IPKDQEHQAP SDPSTGQILK DQGQQASSDP SQVIESDTVS
301: ESVDASENGH NQEAVAEGTS IYVRHLPFNA NIDMLEAEFK QFGAITNGGI QVINQRGLGY PYGFVEFEEA DAAHRAIEAS PVKIGGLRAF VEEKLSTSRG
401: KRGNGNVGYG NRNVGVGMRG RGSYGYGYDY RRGGRGPGGG GRSFNRRGNE YVASINSY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.