Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02983 | Canola | cytosol | 59.6 | 66.18 |
| CDY51206 | Canola | cytosol | 59.82 | 66.1 |
| CDY36616 | Canola | cytosol | 59.38 | 66.09 |
| Bra025122.1-P | Field mustard | cytosol | 55.41 | 62.75 |
| AT1G13730.1 | Thale cress | cytosol | 56.07 | 59.35 |
| KRH50515 | Soybean | cytosol, endoplasmic reticulum, nucleus | 32.45 | 35.68 |
| KRG89479 | Soybean | cytosol, endoplasmic reticulum, nucleus | 33.33 | 32.47 |
| AT1G69250.1 | Thale cress | cytosol | 30.02 | 31.85 |
| AT5G60980.3 | Thale cress | cytosol | 29.58 | 29.13 |
| AT5G48650.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 24.94 | 24.67 |
| AT5G43960.1 | Thale cress | cytosol | 24.28 | 24.44 |
| AT3G25150.2 | Thale cress | plastid | 28.92 | 22.32 |
| Solyc05g012240.1.1 | Tomato | cytosol | 19.65 | 21.65 |
| AT3G55540.1 | Thale cress | cytosol | 15.01 | 20.36 |
| AT3G07250.1 | Thale cress | nucleus | 22.08 | 14.77 |
| PGSC0003DMT400072921 | Potato | cytosol | 20.53 | 14.72 |
| Solyc05g012230.2.1 | Tomato | extracellular | 5.96 | 6.57 |
Protein Annotations
| MapMan:16.9.1 | Gene3D:3.10.450.50 | Gene3D:3.30.70.330 | EntrezGene:814893 | ProteinID:AEC05731.1 | ArrayExpress:AT2G03640 |
| EnsemblPlantsGene:AT2G03640 | RefSeq:AT2G03640 | TAIR:AT2G03640 | RefSeq:AT2G03640-TAIR-G | EnsemblPlants:AT2G03640.4 | TAIR:AT2G03640.4 |
| Unigene:At.43900 | UniProt:F4IT98 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:IPR018222 | RefSeq:NP_001189507.1 | InterPro:NTF2 | InterPro:NTF2-like_dom_sf |
| InterPro:Nuclear_transport_factor_2_euk | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFAM:PF02136 | PO:PO:0000293 | PFscan:PS50102 |
| PFscan:PS50177 | PANTHER:PTHR10693 | PANTHER:PTHR10693:SF41 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54427 | SUPFAM:SSF54928 | UniParc:UPI0001E92D09 | SEG:seg | : | : |
Description
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IT98]
Coordinates
chr2:-:1104314..1106867
Molecular Weight (calculated)
49608.5 Da
IEP (calculated)
9.728
GRAVY (calculated)
-0.567
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPESNAPSV DPQFVGNGFV QEYYNHLYDS TSEVHKFYLE DSMISRPGLD GEIVTIKSLK GINDQIMSID YKSSRIEILT ADSQSTLKNG VVTLVTGLVI
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITEPANE SVEAVIVPTE AKTTVTKPAS AIPNGHAKVP EEKVVNENSS
201: LPKAAEAKLQ EEVPKKSFAL IVQSLAQSAG TLQVKASPVK RKPVEKPVAA PERKAPSPIR KQASAESIKP QAQGSSIFVA NLPMDATIEQ LYETFKSFGA
301: IRKDGIQVRS YPEKKNCIGF VAFENGEAVK NVFQAHRESP IRIGNRRASI EEKRGKFLKG IVVSKIVTLI KCKNKILILL FLDYAGGNNQ NGNRVSTRNN
401: SGYKNEDGFR RDGYKPRGSG VNGGRGYGRR NSESNGDGKA YQNNGHGNTE AKN
101: GNDGGRRKFS QSFFLVSRNG SYFVLNDTFR YVSDEFVEPE ATKEVEESQS TNAITEPANE SVEAVIVPTE AKTTVTKPAS AIPNGHAKVP EEKVVNENSS
201: LPKAAEAKLQ EEVPKKSFAL IVQSLAQSAG TLQVKASPVK RKPVEKPVAA PERKAPSPIR KQASAESIKP QAQGSSIFVA NLPMDATIEQ LYETFKSFGA
301: IRKDGIQVRS YPEKKNCIGF VAFENGEAVK NVFQAHRESP IRIGNRRASI EEKRGKFLKG IVVSKIVTLI KCKNKILILL FLDYAGGNNQ NGNRVSTRNN
401: SGYKNEDGFR RDGYKPRGSG VNGGRGYGRR NSESNGDGKA YQNNGHGNTE AKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.