Factsheet for Zm00001d003033_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11106	Sorghum	cytosol	75.94	81.94
TraesCS2D01G363800.1	Wheat	nucleus	54.39	57.91
TraesCS2A01G366900.1	Wheat	nucleus	53.77	57.24
TraesCS2B01G384400.1	Wheat	cytosol	53.56	57.14
Os04t0510500-01	Rice	cytosol	53.14	54.98
HORVU2Hr1G088550.9	Barley	cytosol, nucleus	48.12	47.72
Zm00001d021999_P002	Maize	plasma membrane	29.08	31.74
Zm00001d016528_P001	Maize	cytosol, mitochondrion, plasma membrane	20.71	20.62
Zm00001d050610_P001	Maize	plasma membrane	20.5	20.55
Zm00001d004070_P003	Maize	extracellular, plasma membrane	20.5	20.08
Zm00001d025165_P001	Maize	plastid	18.83	15.2
Zm00001d022071_P002	Maize	cytosol	17.99	14.68
Zm00001d047289_P003	Maize	plasma membrane	17.57	14.38

Protein Annotations

EntrezGene:100272873	MapMan:16.9.1	Gene3D:3.10.450.50	UniProt:A0A1D6E634	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR018222	InterPro:NTF2
InterPro:NTF2-like_dom_sf	InterPro:Nuclear_transport_factor_2_euk	ProteinID:ONM15929.1	PFAM:PF02136	PFscan:PS50177	PANTHER:PTHR10693
PANTHER:PTHR10693:SF22	InterPro:RBD_domain_sf	SUPFAM:SSF54427	SUPFAM:SSF54928	TMHMM:TMhelix	UniParc:UPI000845808F
EnsemblPlantsGene:Zm00001d003033	EnsemblPlants:Zm00001d003033_P005	EnsemblPlants:Zm00001d003033_T005	SEG:seg	:	:

Description

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Coordinates

chr2:+:29989844..29995440

Molecular Weight (calculated)

54361.7 Da

IEP (calculated)

5.141

GRAVY (calculated)

-0.466

Length

478 amino acids

Sequence
(BLAST)

001: MDSMEQPEPK TAGHYYALQV GSVFLTGYYN VLTNQPHLAN QFYTDNSSVV RLDCETGRWS FGETVEVIND MMMSMKLSKV EVKTANFLES WAGAITLLVT
101: GLVKLKHYPV RKRFAQNIVL APKEDGYFIF SDIFKLICDE YDDQYPFADY NCADNMPQVE ASYTMAEIGS DYLDGEPEAQ ETVDPAENHV QHQDYLEYKA
201: GNVIDDETHL EEHIPPFPSS TDVKRDSPLA LPHPPSPTLE EPVEEAPKTY ASVLRTKSKA TLAITESQQA QQLAQQPQSA SVHEKSNLDN HRDVSVPEDE
301: GLFPFLFTVS LMLLMSFYWT YLSVRDLLHA TEFLSFNGQS YAHKMFLDID RFSSVVHFYV ALTVWFRFSE EFLSVYVGNL SPSTSVFDLE KVFQAFGRIK
401: PDGVAIRSRK ASPVELNGRF VHVEERRPNC GFPRGRRGRG RADFSRDQAG GRYDGEYATR SKGIGHQKKT GRQYDSYY

Best Arabidopsis Sequence Match ( AT5G43960.1 )
(BLAST)

001: MATPYPGATQ VGSYFVGQYY QVLQQQPDLI HQFYSEPSRA IRIDGDSTET ANSLLHIHNM VMSLNFTAIE VKTINSVESW EGGVLVVVSG SVKTKEFSNR
101: RSFVQTFFLA PQEKGYFVLS DVFLFVDEGT VYYHQPSYLS EIKHEAQLNP PTRHPDPQVS DYVLEEEASD YVNAVQIKDD LVDKYSLQED QHQPQHEDYE
201: DEVAIEETPR EEVAVDVVHE HRAAPVEEPV GEKSKMSYAS ILKVAKEAAT VPVAATQPSY NKSSQDINEW DQPMRTPSPQ LAAPLAPIQQ SNSSTYVSDY
301: GAEAEDGSGF EDFEFKSVYV RNLPSDISAS EIEEEFKNFG TIKPDGVFLR TRKDVMGVCY AFVEFEDMTS VENAIKASPI YLGGRQVYIE ERRPNPAGVR
401: GARRGGGRGR GGYPTEAPRG RFGGRGSGRG NQDGGDYRPR GNGYYRGGGR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FND0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.