Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY59680 | Canola | cytosol | 83.61 | 90.67 |
| PGSC0003DMT400041253 | Potato | cytosol | 27.05 | 77.65 |
| CDX83869 | Canola | cytosol | 74.59 | 72.8 |
| CDY26186 | Canola | cytosol | 74.18 | 72.4 |
| CDX96736 | Canola | cytosol | 74.18 | 72.4 |
| CDY60778 | Canola | cytosol, plastid | 73.77 | 72.0 |
| Bra032261.1-P | Field mustard | cytosol | 96.31 | 71.87 |
| CDX81860 | Canola | cytosol | 73.36 | 71.6 |
| CDY21720 | Canola | cytosol | 72.95 | 71.2 |
| AT1G48630.1 | Thale cress | cytosol | 93.44 | 69.94 |
| CDX95554 | Canola | cytosol | 89.34 | 66.87 |
| CDY18497 | Canola | cytosol | 89.34 | 66.87 |
| CDX92200 | Canola | extracellular | 88.52 | 66.46 |
| CDY64888 | Canola | cytosol | 81.15 | 66.22 |
| CDX95784 | Canola | cytosol | 88.11 | 66.15 |
| CDX86074 | Canola | cytosol | 78.69 | 64.43 |
| CDY44104 | Canola | cytosol | 78.69 | 64.43 |
| CDX93686 | Canola | cytosol | 78.69 | 64.43 |
| KRH60497 | Soybean | endoplasmic reticulum, nucleus | 84.84 | 63.69 |
| KRH41792 | Soybean | nucleus | 84.84 | 63.69 |
| VIT_17s0000g02750.t01 | Wine grape | cytosol, plastid | 84.02 | 62.69 |
| Solyc03g119040.2.1 | Tomato | nucleus | 83.2 | 62.27 |
| PGSC0003DMT400074094 | Potato | cytosol | 82.79 | 61.96 |
| Solyc06g069010.2.1 | Tomato | nucleus | 82.38 | 61.66 |
| PGSC0003DMT400014419 | Potato | cytosol | 81.97 | 61.16 |
| Solyc12g040510.1.1 | Tomato | cytosol | 79.1 | 58.66 |
| PGSC0003DMT400040923 | Potato | cytosol | 79.1 | 58.66 |
| CDY52180 | Canola | cytosol | 38.52 | 58.02 |
| Zm00001d038923_P001 | Maize | plastid | 71.31 | 52.1 |
| Zm00001d009480_P001 | Maize | plasma membrane, plastid | 71.31 | 52.1 |
| EES18632 | Sorghum | cytosol | 70.9 | 51.8 |
| Os01t0686800-02 | Rice | cytosol | 70.49 | 51.5 |
| Os05t0552300-02 | Rice | cytosol | 70.49 | 51.19 |
| TraesCS1B01G398800.1 | Wheat | plastid | 69.67 | 50.75 |
| TraesCS1A01G378000.1 | Wheat | cytosol, golgi, nucleus, unclear | 69.26 | 50.45 |
| EES01286 | Sorghum | cytosol | 68.44 | 50.3 |
| TraesCS1D01G385000.1 | Wheat | cytosol | 68.44 | 49.85 |
| HORVU3Hr1G063670.2 | Barley | cytosol | 67.62 | 49.7 |
| TraesCS3D01G264000.1 | Wheat | cytosol | 67.62 | 49.7 |
| TraesCS3B01G297300.1 | Wheat | nucleus | 67.62 | 49.7 |
| TraesCS3A01G263900.1 | Wheat | nucleus | 67.21 | 49.4 |
| HORVU1Hr1G083710.1 | Barley | cytosol | 64.75 | 45.01 |
| GSMUA_Achr2P14580_001 | Banana | cytosol | 55.33 | 43.27 |
| CDX77303 | Canola | cytosol | 39.75 | 31.39 |
| CDX77299 | Canola | plastid | 6.97 | 17.53 |
| CDY39169 | Canola | cytosol, nucleus, plastid | 18.03 | 11.83 |
| CDY28878 | Canola | nucleus | 14.34 | 11.59 |
| CDY45049 | Canola | endoplasmic reticulum, mitochondrion, nucleus, plastid | 7.79 | 9.74 |
| CDY21330 | Canola | nucleus | 16.8 | 8.47 |
| CDY62001 | Canola | nucleus | 16.8 | 8.45 |
| CDY46056 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 30.33 | 8.23 |
Protein Annotations
| MapMan:17.1.3.1.33 | Gene3D:2.130.10.10 | UniProt:A0A078K1X1 | EnsemblPlants:CDY71917 | ProteinID:CDY71917 | ProteinID:CDY71917.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00022500001 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19868 | PANTHER:PTHR19868:SF3 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EF1B07 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : |
Description
BnaCnng75080DBnaCnng75080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K1X1]
Coordinates
chrLK048114:-:57..1334
Molecular Weight (calculated)
26620.4 Da
IEP (calculated)
6.501
GRAVY (calculated)
-0.147
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MCAHTDMVTA IATPVDNSDM IVTSSRDKSI ILWKLNKDEK SYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLATGASTRR FVGHTKDVWN
101: LANCKLRNTL AGHSGYLNTV AVSPDGSLCA SGGKDGGILL WDLAEGKKLY CLEAGSIIHS LCFSPNRYWL CAATENSIRI WDLESKSVVE DLKVDLKAES
201: DVSAGTGNKT KVIYCTSLNW SADGNTLFSG YTDGVIRVWG IGRY
101: LANCKLRNTL AGHSGYLNTV AVSPDGSLCA SGGKDGGILL WDLAEGKKLY CLEAGSIIHS LCFSPNRYWL CAATENSIRI WDLESKSVVE DLKVDLKAES
201: DVSAGTGNKT KVIYCTSLNW SADGNTLFSG YTDGVIRVWG IGRY
001: MAEGLVLKGT MRAHTDMVTA IATPIDNADI IVSASRDKSI ILWKLTKDDK AYGVAQRRLT GHSHFVEDVV LSSDGQFALS GSWDGELRLW DLAAGVSTRR
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
101: FVGHTKDVLS VAFSLDNRQI VSASRDRTIK LWNTLGECKY TISEGGEGHR DWVSCVRFSP NTLQPTIVSA SWDKTVKVWN LSNCKLRSTL AGHTGYVSTV
201: AVSPDGSLCA SGGKDGVVLL WDLAEGKKLY SLEANSVIHA LCFSPNRYWL CAATEHGIKI WDLESKSIVE DLKVDLKAEA EKADNSGPAA TKRKVIYCTS
301: LNWSADGSTL FSGYTDGVIR VWGIGRY
Arabidopsis Description
RACK1ARACK1A_AT [Source:UniProtKB/TrEMBL;Acc:A0A178WHX3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.